MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-460-P1a

Family name MIR-460 (all species)
Seed CUGCAUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-460-P1b  Xla-Mir-460-P2c  Xla-Mir-460-P2d 
Orthologues Aca-Mir-460-P1  Ami-Mir-460-P1  Cli-Mir-460-P1  Cpi-Mir-460-P1  Dre-Mir-460-P1  Gga-Mir-460-P1  Gja-Mir-460-P1  Gmo-Mir-460-P1  Lch-Mir-460-P1  Loc-Mir-460-P1  Mal-Mir-460-P1  Mdo-Mir-460-P1  Mun-Mir-460-P1  Oan-Mir-460-P1  Sha-Mir-460-P1  Spt-Mir-460-P1  Tgu-Mir-460-P1  Tni-Mir-460-P1  Xtr-Mir-460-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Osteichthyes
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030734.1: 4709482-4709540 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUCAAAUGAAACAUAUGGCUUUAUGGAGCCUGCAUUGUACACACUGUGUGUGUACCUCAGACUUGCACAGCGCAUACAAUGUGGAUGCUAUAUGAGUCACAAUCAACCUCAACACCU
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Structure
        10         20         30        40        50         
ACCUCAAAUGAAACAUA-      -|    AGC UG       CACA       UGUACC 
                  UGGCUU UAUGG   C  CAUUGUA    CUGUGUG      \
                  ACUGAG AUAUC   G  GUAACAU    GACACGU      U
UCCACAACUCCAACUAAC      U^    GUA GU       ACGC       UCAGAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-460-P1a_5p
mirBase accessionNone
Sequence 
0- CCUGCAUUGUACACACUGUGUG -22
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Co-mature sequence

Xla-Mir-460-P1a_3p
mirBase accessionNone
Sequence 
37- CACAGCGCAUACAAUGUGGAUG -59
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