MirGeneDB ID | Aca-Mir-460-P1 |
Family name |
MIR-460 (all species) |
Seed |
CUGCAUU |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-460a
|
Paralogues |
Aca-Mir-460-P2
|
Orthologues |
Ami-Mir-460-P1
Cli-Mir-460-P1
Cpi-Mir-460-P1
Dre-Mir-460-P1
Gga-Mir-460-P1
Gja-Mir-460-P1
Gmo-Mir-460-P1
Lch-Mir-460-P1
Loc-Mir-460-P1
Mal-Mir-460-P1
Mdo-Mir-460-P1
Mun-Mir-460-P1
Oan-Mir-460-P1
Sha-Mir-460-P1
Spt-Mir-460-P1
Tgu-Mir-460-P1
Tni-Mir-460-P1
Xla-Mir-460-P1a
Xla-Mir-460-P1b
Xtr-Mir-460-P1
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (anoCar2) |
GL343687.1: 195346-195404 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUCCUCCGAGAUCUCCUGACCUUAUAGGACCUGCAUUGUACACACUGUGUGUAUGGACUGGAGGUGCACAGCGCAUACAAUGUGGAUGCUAUAGAAGUCAACAUCGGCGGCACAACUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUCCUCCGAGAUCUCC- C-| GAC UG CACA GUAUGGA
UGAC UUAUAG C CAUUGUA CUGUGU \
ACUG GAUAUC G GUAACAU GACACG C
GUCAACACGGCGGCUACA AA^ GUA GU ACGC UGGAGGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Aca-Mir-460-P1_5p |
mirBase accession | MIMAT0021970 |
Sequence |
0- CCUGCAUUGUACACACUGUGUG -22
Get sequence
|
Star sequence |
Aca-Mir-460-P1_3p* |
mirBase accession | MIMAT0021971 |
Sequence |
37- CACAGCGCAUACAAUGUGGAUG -59
Get sequence
|