| MirGeneDB ID | Spt-Mir-460-P1 |
|---|---|
| Family name | MIR-460 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-460-P2 |
| Orthologues | Aca-Mir-460-P1 Ami-Mir-460-P1 Cli-Mir-460-P1 Cpi-Mir-460-P1 Dre-Mir-460-P1 Gga-Mir-460-P1 Gja-Mir-460-P1 Gmo-Mir-460-P1 Lch-Mir-460-P1 Loc-Mir-460-P1 Mal-Mir-460-P1 Mdo-Mir-460-P1 Mun-Mir-460-P1 Neu-Mir-460-P1 Oan-Mir-460-P1 Sha-Mir-460-P1 Tgu-Mir-460-P1 Tni-Mir-460-P1 Xla-Mir-460-P1a Xla-Mir-460-P1b Xtr-Mir-460-P1 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01003143.1: 274335-274393 [+] UCSC Ensembl |
| Seed | CUGCAUU |
| Precursor (pre-Mir +30nt flank) |
GCAGAAGGGGAGAUCCCUGACUUUAUAGAACCUGCAUUGUACACACUGUGUGUAUGGUUUGGACAUGCACAGCGCAUACAAUGUGGAUACUAUAAAAGUCAAUCCAGCAUCACCCACCCGet precursor sequence |
| Structure | 10 20 30 40 50 GCAGAAGGGGAGAUCCC- -| AAC UG CACA GUAUGGU UGAC UUUAUAG C CAUUGUA CUGUGU \ ACUG AAAUAUC G GUAACAU GACACG U CCCACCCACUACGACCUA A^ AUA GU ACGC UACAGGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-460-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CCUGCAUUGUACACACUGUGUG -22
Get sequence
|
| Star sequence | Spt-Mir-460-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CACAGCGCAUACAAUGUGGAUA -59
Get sequence
|
