MirGeneDB ID | Tgu-Mir-460-P1 |
Family name |
MIR-460 (all species) |
Seed |
CUGCAUU |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
tgu-mir-460a
|
Paralogues |
Tgu-Mir-460-P2
|
Orthologues |
Aca-Mir-460-P1
Ami-Mir-460-P1
Cli-Mir-460-P1
Cpi-Mir-460-P1
Dre-Mir-460-P1
Gga-Mir-460-P1
Gja-Mir-460-P1
Gmo-Mir-460-P1
Lch-Mir-460-P1
Loc-Mir-460-P1
Mal-Mir-460-P1
Mdo-Mir-460-P1
Mun-Mir-460-P1
Oan-Mir-460-P1
Sha-Mir-460-P1
Spt-Mir-460-P1
Tni-Mir-460-P1
Xla-Mir-460-P1a
Xla-Mir-460-P1b
Xtr-Mir-460-P1
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (TaeGut1_add) |
2: 1265309-1265366 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGCUGGGGAGAUUCCUGACUUUAUAGCACCUGCAUUGUACACACUGUGUGUGUGGCUGGAAAUGCACAGCGCAUACAAUGUGGAUUCUGUACAAGUCGCUCACGGCACGGCGGGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUGCUGGGGAGAUUCCU- -| CAC UG CACA GUGUGG
GACUU UAUAG C CAUUGUA CUGUGU C
CUGAA AUGUC G GUAACAU GACACG U
CGGGGCGGCACGGCACUCG C^ UUA GU ACGC UAAAGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Tgu-Mir-460-P1_5p |
mirBase accession | MIMAT0014614 |
Sequence |
0- CCUGCAUUGUACACACUGUGUG -22
Get sequence
|
Star sequence |
Tgu-Mir-460-P1_3p* |
mirBase accession | MIMAT0014658 |
Sequence |
36- CACAGCGCAUACAAUGUGGAUU -58
Get sequence
|