| MirGeneDB ID | Cpi-Mir-460-P2 |
|---|
| Family name |
MIR-460 (all species) |
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| Species |
Western painted turtle (Chrysemys picta bellii) |
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| MiRBase ID |
cpi-mir-460b
|
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| Paralogues |
Cpi-Mir-460-P1
|
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| Orthologues |
Aca-Mir-460-P2
Ami-Mir-460-P2
Cli-Mir-460-P2
Dre-Mir-460-P2
Gga-Mir-460-P2
Gja-Mir-460-P2
Gmo-Mir-460-P2
Lch-Mir-460-P2
Loc-Mir-460-P2
Mal-Mir-460-P2
Mun-Mir-460-P2
Spt-Mir-460-P2
Tgu-Mir-460-P2
Tni-Mir-460-P2a
Tni-Mir-460-P2b
Xla-Mir-460-P2c
Xla-Mir-460-P2d
Xtr-Mir-460-P2
|
|---|
| Node of Origin (locus) |
Osteichthyes
|
|---|
| Node of Origin (family) |
Osteichthyes
|
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Genome context
(chrPic1) |
JH584720: 6148377-6148435 [-]
UCSC
Ensembl
|
|---|
| Seed |
CCUCAUU |
|---|
Precursor
(pre-Mir +30nt flank) |
CUCAGCCCCUGCAAACCUGGCUCUAUGUUGUCCUCAUUGUACAUGCUGUGUGUAUUUUUAUUACAUACACAGCGCAUGCAAUGUGGACAUAAUGGAGAUCAAUAUACAUCUGAUGAAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCAGCCCCUGCAAACC- -| GU U CA UAUUUU
UGG CUCUAU UGUCC CAUUGUA UGCUGUGUG \
ACU GAGGUA ACAGG GUAACGU GCGACACAU U
UUAAGUAGUCUACAUAUA A^ AU U AC ACAUUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There are Dicer cuts +1 and -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Cpi-Mir-460-P2_5p |
| mirBase accession | MIMAT0037896 |
|---|
| Sequence |
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
|
|---|
| Star sequence |
Cpi-Mir-460-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CACAGCGCAUGCAAUGUGGACA -59
Get sequence
|
|---|
