| MirGeneDB ID | Lch-Mir-460-P2 |
|---|---|
| Family name | MIR-460 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-460-P1 |
| Orthologues | Aca-Mir-460-P2 Ami-Mir-460-P2 Cli-Mir-460-P2 Cpi-Mir-460-P2 Dre-Mir-460-P2 Gga-Mir-460-P2 Gja-Mir-460-P2 Gmo-Mir-460-P2 Loc-Mir-460-P2 Mal-Mir-460-P2 Mun-Mir-460-P2 Spt-Mir-460-P2 Tgu-Mir-460-P2 Tni-Mir-460-P2a Tni-Mir-460-P2b Xla-Mir-460-P2c Xla-Mir-460-P2d Xtr-Mir-460-P2 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (LatCha1_add) |
JH128873.1: 172331-172388 [-] Ensembl |
| Seed | CCUCAUU |
| Precursor (pre-Mir +30nt flank) |
AUCUGUUGGAGUGAAAAUGGCUCUACAUUGUCCUCAUUGUACAUGCUGUGUGUAUUCCAUUACAUACACAGCGCAUACAAUGUGGAUAUCGUCGAGACCAAAAUACAACUGUAAUUUGGet precursor sequence |
| Structure | 10 20 30 40 50 AUCUGUUGGAGUGAAAA- -| U AU U CA UAUUC UGG CUC AC UGUCC CAUUGUA UGCUGUGUG C ACC GAG UG AUAGG GUAACAU GCGACACAU A GUUUAAUGUCAACAUAAA A^ C CU U AC ACAUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-460-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCCUCAUUGUACAUGCUGUGUG -22
Get sequence
|
| Star sequence | Lch-Mir-460-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- CACAGCGCAUACAAUGUGGAUA -58
Get sequence
|
