Mir-10-P2d

MirGeneDB ID

Cli-Mir-10-P2d

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-100-1

Paralogues

Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cli-Mir-10-P1c-v1 Cli-Mir-10-P1c-v2 Cli-Mir-10-P1d-v1 Cli-Mir-10-P1d-v2 Cli-Mir-10-P2c Cli-Mir-10-P3c Cli-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Ami-Mir-10-P2d Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cgi-Mir-10-P2 Cin-Mir-10-P2 Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mml-Mir-10-P2d Mmu-Mir-10-P2d Mun-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ovu-Mir-10-P2 Pbv-Mir-10-P2d Pfl-Mir-10-P2 Pmi-Mir-10-P2 Rno-Mir-10-P2d Sha-Mir-10-P2d Sko-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(colLiv2)

scaffold367: 869683-869739 [-]

Clustered miRNAs
(< 50kb from Mir-10-P2d)

Mir-10-P3d scaffold367: 846267-846328 [-]
Let-7-P1d scaffold367: 862707-862773 [-]
Mir-10-P2d scaffold367: 869683-869739 [-]

Precursor
(pre-Mir +30nt flank)

UUACAGAAGAGAUCCGCGCCUGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUCAUAUUCCACACAAGCUUGUAUCUAUAGGUAUGUGUCUGUCUGGCAAGUGCACAAAGUGGUGU

Get precursor sequence

Structure

        10         20         30        40        50        
UUACAGAAGAGAUCCGC-   UGUUGC-|   A   CG     C   A      GUCAU 
                  GCC       CACA ACC  UAGAU CGA CUUGUG     \
                  CGG       GUGU UGG  AUCUA GUU GAACAC     A
UGUGGUGAAACACGUGAA   UCUGUCU^   A   AU     U   C      ACCUU 
     110       100        90        80        70        60