MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-10-P2d

Family name MIR-10 (all species)
Seed ACCCGUA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-100
Paralogues Rno-Mir-10-P1b-v1  Rno-Mir-10-P1b-v2  Rno-Mir-10-P1c-v1  Rno-Mir-10-P1c-v2  Rno-Mir-10-P2b  Rno-Mir-10-P2c  Rno-Mir-10-P3b  Rno-Mir-10-P3c  Rno-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2d  Ami-Mir-10-P2d  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2d  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2d  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cli-Mir-10-P2d  Cmi-Mir-10-P2d  Cpi-Mir-10-P2d  Cpo-Mir-10-P2d  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2d  Dpu-Mir-10-P2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2d  Gga-Mir-10-P2d  Gja-Mir-10-P2d  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Hsa-Mir-10-P2d  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2d  Lgi-Mir-10-P2  Loc-Mir-10-P2d  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mdo-Mir-10-P2d  Mml-Mir-10-P2d  Mmu-Mir-10-P2d  Mun-Mir-10-P2d  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2d  Obi-Mir-10-P2  Ocu-Mir-10-P2d  Ovu-Mir-10-P2  Pbv-Mir-10-P2d  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Sha-Mir-10-P2d  Sko-Mir-10-P2  Spt-Mir-10-P2d  Sto-Mir-10-P2d  Tca-Mir-10-P2  Tgu-Mir-10-P2d  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(rn6)		 chr8: 45746960-45747016 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2d)		 Mir-10-P2d chr8: 45746960-45747016 [+] UCSC Ensembl
Let-7-P1d chr8: 45753280-45753346 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGAGAAGAUACUGAAGCCUGUUGCCACAAACCCGUAGAUCCGAACUUGUGCUGACCAUGCACACAAGCUUGUGUCUAUAGGUAUGUGUCUGUUAGGCGAUCCCACAGUCCAGGGG
Get precursor sequence
Structure
        10         20         30        40        50        
CCAGAGAAGAUACUGAA-     UUGC-|   A   CG    UC   A      CUGAC 
                  GCCUG     CACA ACC  UAGA  CGA CUUGUG     \
                  CGGAU     GUGU UGG  AUCU  GUU GAACAC     C
GGGGACCUGACACCCUAG     UGUCU^   A   AU    GU   C      ACGUA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-10-P2d_5p
mirBase accessionMIMAT0000822
Sequence 
0- AACCCGUAGAUCCGAACUUGUG -22
Get sequence
Proposed targets microrna.org: MIMAT0000822
TargetScanVert: rno-miR-100-5p
miRDB: MIMAT0000822
Star sequence

Rno-Mir-10-P2d_3p*
mirBase accessionMIMAT0017112
Sequence 
35- CAAGCUUGUGUCUAUAGGUAUG -57
Get sequence
Proposed targets TargetScanVert: rno-miR-100-3p
miRDB: MIMAT0017112