MirGeneDB 2.1
MirGeneDB ID

Aca-Mir-10-P2d

Family name MIR-10 (all species)
Seed ACCCGUA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-100
Paralogues Aca-Mir-10-P1b-v1  Aca-Mir-10-P1b-v2  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1c-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Aca-Mir-10-P2b  Aca-Mir-10-P2c  Aca-Mir-10-P3b  Aca-Mir-10-P3c  Aca-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Ami-Mir-10-P2d  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2d  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2d  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cli-Mir-10-P2d  Cmi-Mir-10-P2d  Cpi-Mir-10-P2d  Cpo-Mir-10-P2d  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2d  Dpu-Mir-10-P2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2d  Gga-Mir-10-P2d  Gja-Mir-10-P2d  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Hsa-Mir-10-P2d  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2d  Lgi-Mir-10-P2  Loc-Mir-10-P2d  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mdo-Mir-10-P2d  Mml-Mir-10-P2d  Mmu-Mir-10-P2d  Mun-Mir-10-P2d  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2d  Obi-Mir-10-P2  Ocu-Mir-10-P2d  Ovu-Mir-10-P2  Pbv-Mir-10-P2d  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Rno-Mir-10-P2d  Sha-Mir-10-P2d  Sko-Mir-10-P2  Spt-Mir-10-P2d  Sto-Mir-10-P2d  Tca-Mir-10-P2  Tgu-Mir-10-P2d  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(anoCar2)		 LGa: 2624872-2624928 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2d)		 Mir-10-P3d LGa: 2579072-2579133 [-] UCSC Ensembl
Mir-10-P2d LGa: 2624872-2624928 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAGAAGAUCUUCCUGCUAGUUGCCACAAACCCGUAGAUCCGAACUUGUGCUUCUAUGUUACACAAGCUUGUGUCUAUAGGUAUGUGUCUGCUUGGCCAAUUCACAAAACGUGGU
Get precursor sequence
Structure
        10         20         30        40        50        
AAAAAGAAGAUCUUCCU-   -|  UGC    A   CG    UC   A      CUUCU 
                  GCU AGU   CACA ACC  UAGA  CGA CUUGUG     \
                  CGG UCG   GUGU UGG  AUCU  GUU GAACAC     A
UGGUGCAAAACACUUAAC   U^  UCU    A   AU    GU   C      AUUGU 
     110       100        90        80        70        60
Deep sequencing
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CommentBased on the 3' moR reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
-   +
Sk To Wh
Mature sequence

Aca-Mir-10-P2d_5p
mirBase accessionMIMAT0021709
Sequence 
0- AACCCGUAGAUCCGAACUUGUG -22
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Star sequence

Aca-Mir-10-P2d_3p*
mirBase accessionNone
Sequence 
35- CAAGCUUGUGUCUAUAGGUAUG -57
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