Mir-10-P2d

MirGeneDB ID

Mdo-Mir-10-P2d

Family name

MIR-10 (all species)

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-100

Paralogues

Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1c-v1 Mdo-Mir-10-P3c Mdo-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2d Asp-Mir-10 Bfl-Mir-10-P2-v1 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2d Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2d Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mgi-Mir-10-P2 Mml-Mir-10-P2d Mmr-Mir-10-P2d Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2d Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(monDom5_add)

4: 226180113-226180169 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2d)

Mir-10-P2d 4: 226180113-226180169 [+] UCSC Ensembl
Let-7-P1d 4: 226185497-226185563 [+] UCSC Ensembl
Mir-10-P3d 4: 226229993-226230054 [+] UCSC Ensembl

Seed

ACCCGUA

Precursor
(pre-Mir +30nt flank)

CAAGAGAAGAUUCUGGGGCCUGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUGAUAUUCCACACAAGCUUGUGUCUAUAGGUAUGUGUCUGUCAGGCAAUCUCACAAACCAGGGG

Get precursor sequence

Structure

        10         20         30        40        50        
CAAGAGAAGAUUCUGGG-     UUGC-|   A   CG    UC   A      GUGAU 
                  GCCUG     CACA ACC  UAGA  CGA CUUGUG     \
                  CGGAC     GUGU UGG  AUCU  GUU GAACAC     A
GGGGACCAAACACUCUAA     UGUCU^   A   AU    GU   C      ACCUU 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-10-P2d_5p

mirBase accession

MIMAT0004097

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-100-5p

Star sequence

Mdo-Mir-10-P2d_3p*

mirBase accession

MIMAT0026656

Sequence

35- CAAGCUUGUGUCUAUAGGUAUG -57

Get sequence

Proposed targets

TargetScanVert: mdo-miR-100-3p