MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-10-P2d1

Family name MIR-10 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-100-1
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d2  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2d  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Ami-Mir-10-P2d  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bpl-Mir-10-P2  Bta-Mir-10-P2d  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2d  Cin-Mir-10-P2  Cja-Mir-10-P2d  Cli-Mir-10-P2d  Cmi-Mir-10-P2d  Cpi-Mir-10-P2d  Cpo-Mir-10-P2d  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2d  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Eca-Mir-10-P2d  Ete-Mir-10-P2d  Gga-Mir-10-P2d  Gja-Mir-10-P2d  Gmo-Mir-10-P2d1  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Hsa-Mir-10-P2d  Isc-Mir-10-P2  Laf-Mir-10-P2d  Lan-Mir-10-P2  Lch-Mir-10-P2d  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Loc-Mir-10-P2d  Mal-Mir-10-P2d1  Mdo-Mir-10-P2d  Mgi-Mir-10-P2  Mml-Mir-10-P2d  Mmr-Mir-10-P2d  Mmu-Mir-10-P2d  Mom-Mir-10-P2  Mun-Mir-10-P2d  Neu-Mir-10-P2d  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2d  Obi-Mir-10-P2  Ocu-Mir-10-P2d  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pab-Mir-10-P2d  Pau-Mir-10-P2  Pbv-Mir-10-P2d  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rno-Mir-10-P2d  Rph-Mir-10-P2  Sha-Mir-10-P2d  Sko-Mir-10-P2  Snu-Mir-10-P2  Spt-Mir-10-P2d  Sto-Mir-10-P2d  Tca-Mir-10-P2  Tgu-Mir-10-P2d  Tni-Mir-10-P2d1  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)		 chr15: 21437656-21437712 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2d1)		 Mir-10-P2d1 chr15: 21437656-21437712 [+] UCSC Ensembl
Let-7-P1d1 chr15: 21437886-21437952 [+] UCSC Ensembl
Mir-10-P3d1 chr15: 21447701-21447762 [+] UCSC Ensembl
Seed ACCCGUA
Precursor
(pre-Mir +30nt flank)		 
UCUCCAGGAAGAGACCUGCCUGCUGACACAAACCCGUAGAUCCGAACUUGUGGUGACUGUCCACACAAGCUUGUAUCUAUAGGUAUCUGUCUGUGUGGCCUUCACACCUACUGAUCA
Get precursor sequence
Structure
        10         20         30        40        50        
UCUCCAGGAAGAGACCU-   -|  U    CAA   CG     C   A      GUGAC 
                  GCC UGC GACA   ACC  UAGAU CGA CUUGUG     \
                  CGG GUG CUGU   UGG  AUCUA GUU GAACAC     U
ACUAGUCAUCCACACUUC   U^  U    CUA   AU     U   C      ACCUG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P2d1_5p
mirBase accessionMIMAT0001813
Sequence 
0- AACCCGUAGAUCCGAACUUGUG -22
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Proposed targets TargetScanFish: dre-miR-100
Star sequence

Dre-Mir-10-P2d1_3p*
mirBase accessionMIMAT0031957
Sequence 
35- CAAGCUUGUAUCUAUAGGUAUC -57
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