Let-7-P1d1

MirGeneDB ID

Dre-Let-7-P1d1

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-let-7a-2

Paralogues

Dre-Let-7-P1b1 Dre-Let-7-P1b2 Dre-Let-7-P1c1 Dre-Let-7-P1c2 Dre-Let-7-P1d2 Dre-Let-7-P2a1a Dre-Let-7-P2a2a Dre-Let-7-P2a2b Dre-Let-7-P2a3a Dre-Let-7-P2a3b Dre-Let-7-P2a4a Dre-Let-7-P2a4b Dre-Let-7-P2b1a Dre-Let-7-P2b2a Dre-Let-7-P2b2b Dre-Let-7-P2b3a Dre-Let-7-P2b4a Dre-Let-7-P2b4b Dre-Let-7-P2c2b Dre-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1d Ami-Let-7-P1d Bge-Let-7 Bpl-Let-7 Bta-Let-7-P1d Cfa-Let-7-P1d Cgi-Let-7 Cin-Let-7-P1 Cli-Let-7-P1d Cmi-Let-7-P1d Cpi-Let-7-P1d Cpo-Let-7-P1d Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P1d Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P1d Gga-Let-7-P1d Gja-Let-7-P1d Gmo-Let-7-P1d1 Hme-Let-7 Hsa-Let-7-P1d Isc-Let-7 Lan-Let-7 Lch-Let-7-P1d Lgi-Let-7 Loc-Let-7-P1d Mal-Let-7-P1d1 Mdo-Let-7-P1d Mml-Let-7-P1d Mmu-Let-7-P1d Mun-Let-7-P1d Npo-Let-7 Oan-Let-7-P1d Obi-Let-7 Ocu-Let-7-P1d Ovu-Let-7 Pbv-Let-7-P1d Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P1d Sha-Let-7-P1d Sko-Let-7 Spt-Let-7-P1d Spu-Let-7 Sto-Let-7-P1d Tca-Let-7 Tgu-Let-7-P1d Tni-Let-7-P1d1 Xbo-Let-7

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr15: 21437886-21437952 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P1d1)

Mir-10-P2d1 chr15: 21437656-21437712 [+] UCSC Ensembl
Let-7-P1d1 chr15: 21437886-21437952 [+] UCSC Ensembl
Mir-10-P3d1 chr15: 21447701-21447762 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCUCAGGGUGUCUGCGGUGCCCCCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAAUAACAUCACUGGAGAUAACUGUACAACCUCCUAGCUUUCCCUGAGAUACACACGCUCCCGCCUCAACUGA

Get precursor sequence

Structure

        10         20         30        40        50        60   
CUCCUCAGGGUGUCUGCG-   CCCC-|   CU   G   U             UAGAAUAACA 
                   GUG     CAGG  GAG UAG AGGUUGUAUAGUU          \
                   CAC     GUCC  UUC AUC UCCAACAUGUCAA          U
AGUCAACUCCGCCCUCGCA   AUAGA^   CU   G   C             UAGAGGUCAC 
     120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Let-7-P1d1_5p

mirBase accession

MIMAT0001759

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Proposed targets

TargetScanFish: dre-let-7a

Star sequence

Dre-Let-7-P1d1_3p*

mirBase accession

None

Sequence

45- CUGUACAACCUCCUAGCUUUCC -67

Get sequence