MirGeneDB ID | Dre-Let-7-P1d1 |
Family name |
LET-7 (all species) |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-let-7a-2
|
Paralogues |
Dre-Let-7-P1b1
Dre-Let-7-P1b2
Dre-Let-7-P1c1
Dre-Let-7-P1c2
Dre-Let-7-P1d2
Dre-Let-7-P2a1a
Dre-Let-7-P2a2a
Dre-Let-7-P2a2b
Dre-Let-7-P2a3a
Dre-Let-7-P2a3b
Dre-Let-7-P2a4a
Dre-Let-7-P2a4b
Dre-Let-7-P2b1a
Dre-Let-7-P2b2a
Dre-Let-7-P2b2b
Dre-Let-7-P2b3a
Dre-Let-7-P2b4a
Dre-Let-7-P2b4b
Dre-Let-7-P2c2b
Dre-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P1d
Aga-Let-7
Agr-Let-7
Ami-Let-7-P1d
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P1d
Cfa-Let-7-P1d
Cin-Let-7-P1
Cja-Let-7-P1d
Cli-Let-7-P1d
Cmi-Let-7-P1d
Cpi-Let-7-P1d
Cpo-Let-7-P1d
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P1d
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P1d
Egr-Let-7
Esc-Let-7
Ete-Let-7-P1d
Gga-Let-7-P1d
Gja-Let-7-P1d
Gmo-Let-7-P1d1
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P1d
Isc-Let-7
Laf-Let-7-P1d
Lan-Let-7
Lch-Let-7-P1d
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P1d
Mal-Let-7-P1d1
Mdo-Let-7-P1d
Mgi-Let-7
Mml-Let-7-P1d
Mmr-Let-7-P1d
Mmu-Let-7-P1d
Mom-Let-7
Mun-Let-7-P1d
Neu-Let-7-P1d
Npo-Let-7
Oan-Let-7-P1d
Obi-Let-7
Ocu-Let-7-P1d
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P1d
Pau-Let-7
Pbv-Let-7-P1d
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P1d
Rph-Let-7
Sha-Let-7-P1d
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P1d
Spu-Let-7
Sro-Let-7
Sto-Let-7-P1d
Tca-Let-7
Tgu-Let-7-P1d
Tni-Let-7-P1d1
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (danRer11) |
chr15: 21437886-21437952 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Let-7-P1d1) |
Mir-10-P2d1
chr15: 21437656-21437712 [+]
UCSC
Ensembl
Let-7-P1d1
chr15: 21437886-21437952 [+]
UCSC
Ensembl
Mir-10-P3d1
chr15: 21447701-21447762 [+]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
CUCCUCAGGGUGUCUGCGGUGCCCCCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAAUAACAUCACUGGAGAUAACUGUACAACCUCCUAGCUUUCCCUGAGAUACACACGCUCCCGCCUCAACUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUCCUCAGGGUGUCUGCG- CCCC-| CU G U UAGAAUAACA
GUG CAGG GAG UAG AGGUUGUAUAGUU \
CAC GUCC UUC AUC UCCAACAUGUCAA U
AGUCAACUCCGCCCUCGCA AUAGA^ CU G C UAGAGGUCAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Mature sequence |
Dre-Let-7-P1d1_5p |
mirBase accession | MIMAT0001759 |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Proposed targets |
TargetScanFish: dre-let-7a
|
Star sequence |
Dre-Let-7-P1d1_3p* |
mirBase accession | None |
Sequence |
45- CUGUACAACCUCCUAGCUUUCC -67
Get sequence
|