MirGeneDB 2.1

MirGeneDB ID

Mal-Let-7-P1d1

Family name LET-7 (all species)
Seed GAGGUAG
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Let-7-P1b1  Mal-Let-7-P1b2  Mal-Let-7-P1c2  Mal-Let-7-P1d2  Mal-Let-7-P2a1a  Mal-Let-7-P2a2a  Mal-Let-7-P2a2b  Mal-Let-7-P2a3a  Mal-Let-7-P2a3b  Mal-Let-7-P2a4a  Mal-Let-7-P2a4b  Mal-Let-7-P2b1a  Mal-Let-7-P2b2a  Mal-Let-7-P2b2b  Mal-Let-7-P2b3a  Mal-Let-7-P2b4a  Mal-Let-7-P2b4b  Mal-Let-7-P2c2b  Mal-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1d  Ami-Let-7-P1d  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1d  Cfa-Let-7-P1d  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1d  Cmi-Let-7-P1d  Cpi-Let-7-P1d  Cpo-Let-7-P1d  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1d  Dpu-Let-7  Dre-Let-7-P1d1  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1d  Gga-Let-7-P1d  Gja-Let-7-P1d  Gmo-Let-7-P1d1  Hme-Let-7  Hsa-Let-7-P1d  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1d  Lgi-Let-7  Loc-Let-7-P1d  Mdo-Let-7-P1d  Mml-Let-7-P1d  Mmu-Let-7-P1d  Mun-Let-7-P1d  Npo-Let-7  Oan-Let-7-P1d  Obi-Let-7  Ocu-Let-7-P1d  Ovu-Let-7  Pbv-Let-7-P1d  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1d  Sha-Let-7-P1d  Sko-Let-7  Spt-Let-7-P1d  Spu-Let-7  Sto-Let-7-P1d  Tca-Let-7  Tgu-Let-7-P1d  Tni-Let-7-P1d1  Xbo-Let-7 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884902.1: 376370-376436 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGGCAUCCAGGUCUGCUUGCUCCCAGGUUGAGGUAGUAGGUUGUAUAGUUGAGAAUUACACCCCAGGAGAUAACUGUACAACCUCCUAGCUUUCCCUGAGGUAUGCGUGGCACUCUGCUCAGCUG
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Structure
        10        20           30        40        50        60   
CAUGGCAUCCAGGUCUGCU   U--  -|   UU   G   U             GAGAAUUACA 
                   UGC   CC CAGG  GAG UAG AGGUUGUAUAGUU          \
                   GCG   GG GUCC  UUC AUC UCCAACAUGUCAA          C
GUCGACUCGUCUCACGGU-   UAU  A^   CU   G   C             UAGAGGACCC 
     120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Let-7-P1d1_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Mal-Let-7-P1d1_3p*

mirBase accessionNone
Sequence
45- CUGUACAACCUCCUAGCUUUCC -67
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