MirGeneDB 2.1

MirGeneDB ID

Rno-Let-7-P1d

Family name LET-7 (all species)
Seed GAGGUAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-let-7a-2
Paralogues Rno-Let-7-P1b  Rno-Let-7-P1c  Rno-Let-7-P2a1  Rno-Let-7-P2a2  Rno-Let-7-P2a3  Rno-Let-7-P2b1  Rno-Let-7-P2b2  Rno-Let-7-P2b3  Rno-Let-7-P2c1  Rno-Let-7-P2c2  Rno-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1d  Ami-Let-7-P1d  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1d  Cfa-Let-7-P1d  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1d  Cmi-Let-7-P1d  Cpi-Let-7-P1d  Cpo-Let-7-P1d  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1d  Dpu-Let-7  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1d  Gga-Let-7-P1d  Gja-Let-7-P1d  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Hme-Let-7  Hsa-Let-7-P1d  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1d  Lgi-Let-7  Loc-Let-7-P1d  Mal-Let-7-P1d1  Mal-Let-7-P1d2  Mdo-Let-7-P1d  Mml-Let-7-P1d  Mmu-Let-7-P1d  Mun-Let-7-P1d  Npo-Let-7  Oan-Let-7-P1d  Obi-Let-7  Ocu-Let-7-P1d  Ovu-Let-7  Pbv-Let-7-P1d  Pfl-Let-7  Pmi-Let-7  Sha-Let-7-P1d  Sko-Let-7  Spt-Let-7-P1d  Spu-Let-7  Sto-Let-7-P1d  Tca-Let-7  Tgu-Let-7-P1d  Tni-Let-7-P1d1  Tni-Let-7-P1d2  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr8: 45753280-45753346 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1d)
Mir-10-P2d chr8: 45746960-45747016 [+] UCSC Ensembl
Let-7-P1d chr8: 45753280-45753346 [+] UCSC Ensembl
Mir-10-P3d chr8: 45798274-45798335 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAGCCACUGUGACGGCAUGCUCCCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAGUUACAACAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUGGGACUUGCACAAAGCAACAUGGUGAGA
Get precursor sequence
Structure
        10        20           30        40        50        60   
UCCAGCCACUGUGACGGCA   ---|      CU   G   U             UAGAGUUACA 
                   UGC   UCCCAGG  GAG UAG AGGUUGUAUAGUU          \
                   ACG   AGGGUUC  UUC AUC UCCGACAUGUCAA          A
AGAGUGGUACAACGAAAC-   UUC^      CU   G   C             UAGAGGGAAC 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Rno-Let-7-P1d_5p

mirBase accessionMIMAT0000774
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Proposed targets microrna.org: MIMAT0000774
TargetScanVert: rno-let-7a-5p
miRDB: MIMAT0000774
Star sequence

Rno-Let-7-P1d_3p*

mirBase accessionMIMAT0017086
Sequence
45- CUGUACAGCCUCCUAGCUUUCC -67
Get sequence
Proposed targets TargetScanVert: rno-let-7a-2-3p
miRDB: MIMAT0017086