Let-7-P2c2

MirGeneDB ID

Rno-Let-7-P2c2

Family name

LET-7 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-let-7i

Paralogues

Rno-Let-7-P1b Rno-Let-7-P1c Rno-Let-7-P1d Rno-Let-7-P2a1 Rno-Let-7-P2a2 Rno-Let-7-P2a3 Rno-Let-7-P2b1 Rno-Let-7-P2b2 Rno-Let-7-P2b3 Rno-Let-7-P2c1 Rno-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2c2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2c2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2c2 Cfa-Let-7-P2c2 Cja-Let-7-P2c2 Cli-Let-7-P2c2 Cmi-Let-7-P2c2 Cpi-Let-7-P2c2 Cpo-Let-7-P2c2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2c2 Dpu-Let-7 Dre-Let-7-P2c2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2c2 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2c2 Gga-Let-7-P2c2 Gja-Let-7-P2c2 Gmo-Let-7-P2c2a Gmo-Let-7-P2c2b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2c2 Isc-Let-7 Laf-Let-7-P2c2 Lan-Let-7 Lch-Let-7-P2c2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2c2 Mal-Let-7-P2c2b Mdo-Let-7-P2c2 Mgi-Let-7 Mml-Let-7-P2c2 Mmr-Let-7-P2c2 Mmu-Let-7-P2c2 Mom-Let-7 Mun-Let-7-P2c2 Neu-Let-7-P2c2 Npo-Let-7 Oan-Let-7-P2c2 Obi-Let-7 Ocu-Let-7-P2c2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2c2 Pau-Let-7 Pbv-Let-7-P2c2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rph-Let-7 Sha-Let-7-P2c2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2c2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2c2 Tca-Let-7 Tgu-Let-7-P2c2 Tni-Let-7-P2c2a Tni-Let-7-P2c2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2c2 Xtr-Let-7-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr7: 66802736-66802812 [+] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

UCCCGCCGGCUCCCACACCAUGGCCCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGUGCUGGUGAUGCUCAGCGCCGCGGAGG

Get precursor sequence

Structure

        10            20        30        40        50        60        
UCCCGCCGGCUCCCACA----|  UG  C     U                 U   GGUCGGGUUGUGACA 
                     CCA  GC CUGGC GAGGUAGUAGUUUGUGC GUU               U
                     GGU  CG GAUCG UUCCGUCAUCGAACGCG CAA               U
GGAGGCGCCGCGACUCGUAGU^  --  U     -                 U   UAGAGGUGUCGCCCG 
     130       120         110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Let-7-P2c2_5p

mirBase accession

MIMAT0000779

Sequence

0- UGAGGUAGUAGUUUGUGCUGUU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000779
TargetScanVert: rno-let-7i-5p
miRDB: MIMAT0000779

Star sequence

Rno-Let-7-P2c2_3p*

mirBase accession

MIMAT0004707

Sequence

56- CUGCGCAAGCUACUGCCUUGC -77

Get sequence

Proposed targets

microrna.org: MIMAT0004707
TargetScanVert: rno-let-7i-3p
miRDB: MIMAT0004707