MirGeneDB ID | Rno-Let-7-P2b3 |
Family name |
LET-7 (all species) |
Species |
Norway rat (Rattus norvegicus) |
MiRBase ID |
rno-mir-98
|
Paralogues |
Rno-Let-7-P1b
Rno-Let-7-P1c
Rno-Let-7-P1d
Rno-Let-7-P2a1
Rno-Let-7-P2a2
Rno-Let-7-P2a3
Rno-Let-7-P2b1
Rno-Let-7-P2b2
Rno-Let-7-P2c1
Rno-Let-7-P2c2
Rno-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b3
Aga-Let-7
Agr-Let-7
Ami-Let-7-P2b3
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P2b3
Cfa-Let-7-P2b3
Cja-Let-7-P2b3
Cpi-Let-7-P2b3
Cpo-Let-7-P2b3
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2b3
Dpu-Let-7
Dre-Let-7-P2b3a
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P2b3
Egr-Let-7
Esc-Let-7
Ete-Let-7-P2b3
Gja-Let-7-P2b3
Gmo-Let-7-P2b3a
Gmo-Let-7-P2b3b
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P2b3
Isc-Let-7
Laf-Let-7-P2b3
Lan-Let-7
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P2b3
Mal-Let-7-P2b3a
Mgi-Let-7
Mml-Let-7-P2b3
Mmr-Let-7-P2b3
Mmu-Let-7-P2b3
Mom-Let-7
Mun-Let-7-P2b3
Npo-Let-7
Oan-Let-7-P2b3
Obi-Let-7
Ocu-Let-7-P2b3
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P2b3
Pau-Let-7
Pbv-Let-7-P2b3
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P2b3
Spu-Let-7
Sro-Let-7
Sto-Let-7-P2b3
Tca-Let-7
Tni-Let-7-P2b3a
Tni-Let-7-P2b3b
Tur-Let-7
War-Let-7
Xbo-Let-7
Xla-Let-7-P2b3c
Xla-Let-7-P2b3d
Xtr-Let-7-P2b3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (rn6) |
chrX: 21583890-21583968 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Let-7-P2b3) |
Let-7-P2a3
chrX: 21583279-21583349 [+]
UCSC
Ensembl
Let-7-P2b3
chrX: 21583890-21583968 [+]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
CCUUACUAGAGACAUCUGCACAUGCUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUUUUAGGCCCCAAUAAGAAGAUAACUAUACAACUUACUACUUUCCCUGGUGUGUGGCAUACUCACAUUAAGUCUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCUUACUAGAGACAUCUG--| UG U U GUGGGGUAGGGAUUUU
CACAUGC GGG GAGGUAGUAAGUUGUAU GUU A
GUGUGUG CCC UUUCAUCAUUCAACAUA CAA G
UUCUGAAUUACACUCAUACG^ GU - U UAGAAGAAUAACCCCG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
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Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
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Dr |
Dr |
Ad |
Bi |
Bi |
Bi |
Bi |
Br |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Du |
Du |
Du |
Du |
Fa |
He |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Ki |
La |
Li |
Li |
Li |
Li |
Li |
Li |
Lu |
Me |
Me |
Mu |
Ov |
Pa |
Pa |
Pa |
Sk |
Sm |
So |
So |
So |
So |
Sp |
St |
St |
St |
St |
Te |
Te |
Th |
Ut |
Wh |
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Mature sequence |
Rno-Let-7-P2b3_5p |
mirBase accession | MIMAT0000819 |
Sequence |
0- UGAGGUAGUAAGUUGUAUUGUU -22
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000819
TargetScanVert: rno-miR-98-5p
miRDB: MIMAT0000819
|
Star sequence |
Rno-Let-7-P2b3_3p* |
mirBase accession | MIMAT0017111 |
Sequence |
58- CUAUACAACUUACUACUUUCC -79
Get sequence
|
Proposed targets |
TargetScanVert: rno-miR-98-3p
miRDB: MIMAT0017111
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