MirGeneDB ID | Mal-Let-7-P2b3a |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Let-7-P1b1
Mal-Let-7-P1b2
Mal-Let-7-P1c2
Mal-Let-7-P1d1
Mal-Let-7-P1d2
Mal-Let-7-P2a1a
Mal-Let-7-P2a2a
Mal-Let-7-P2a2b
Mal-Let-7-P2a3a
Mal-Let-7-P2a3b
Mal-Let-7-P2a4a
Mal-Let-7-P2a4b
Mal-Let-7-P2b1a
Mal-Let-7-P2b2a
Mal-Let-7-P2b2b
Mal-Let-7-P2b4a
Mal-Let-7-P2b4b
Mal-Let-7-P2c2b
Mal-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b3
Ami-Let-7-P2b3
Bge-Let-7
Bpl-Let-7
Bta-Let-7-P2b3
Cfa-Let-7-P2b3
Cgi-Let-7
Cpi-Let-7-P2b3
Cpo-Let-7-P2b3
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2b3
Dpu-Let-7
Dre-Let-7-P2b3a
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Ete-Let-7-P2b3
Gja-Let-7-P2b3
Gmo-Let-7-P2b3a
Gmo-Let-7-P2b3b
Hme-Let-7
Hsa-Let-7-P2b3
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Loc-Let-7-P2b3
Mml-Let-7-P2b3
Mmu-Let-7-P2b3
Mun-Let-7-P2b3
Npo-Let-7
Oan-Let-7-P2b3
Obi-Let-7
Ocu-Let-7-P2b3
Ovu-Let-7
Pbv-Let-7-P2b3
Pfl-Let-7
Pmi-Let-7
Rno-Let-7-P2b3
Sko-Let-7
Spt-Let-7-P2b3
Spu-Let-7
Sto-Let-7-P2b3
Tca-Let-7
Tni-Let-7-P2b3a
Tni-Let-7-P2b3b
Xbo-Let-7
Xla-Let-7-P2b3c
Xla-Let-7-P2b3d
Xtr-Let-7-P2b3
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884694.1: 2728608-2728688 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUCUCUUUAUACUUGGUUGUGCUGUGGUGAGGUAGUAAGUUGUGUUGUUGUUGGGGAUCAGGAUUGUGUACCCCGUUCAGGAGAUAACUAUACAACUUACUGCCUUCCUCAUCAGAGGCCAUUGGCAUCUAUAGAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
UUUUUCUCUUUAUACUU- G-| C U U U GUUGGGGAUCAGGAUUG
GGUU UG UG GG GAGGUAGUAAGUUGUGU GUU U
CCGG AC AC CC UUCCGUCAUUCAACAUA CAA G
AAGAGAUAUCUACGGUUA AG^ U U - U UAGAGGACUUGCCCCAU
. 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
Comment | Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the conservation of Let7-P2 processing. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mal-Let-7-P2b3a_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAAGUUGUGUUGUU -22
Get sequence
|
Star sequence |
Mal-Let-7-P2b3a_3p* |
mirBase accession | None |
Sequence |
60- CUAUACAACUUACUGCCUUCC -81
Get sequence
|