MirGeneDB 3.0
MirGeneDB ID

Spt-Let-7-P2b3

Family name LET-7 (all species)
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Let-7-P1b  Spt-Let-7-P1c  Spt-Let-7-P1d  Spt-Let-7-P2a1  Spt-Let-7-P2a2  Spt-Let-7-P2a3  Spt-Let-7-P2a4  Spt-Let-7-P2b1  Spt-Let-7-P2b2  Spt-Let-7-P2b4  Spt-Let-7-P2c1  Spt-Let-7-P2c2  Spt-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b3  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2b3  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2b3  Cfa-Let-7-P2b3  Cja-Let-7-P2b3  Cpi-Let-7-P2b3  Cpo-Let-7-P2b3  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b3  Dpu-Let-7  Dre-Let-7-P2b3a  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2b3  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2b3  Gja-Let-7-P2b3  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2b3  Isc-Let-7  Laf-Let-7-P2b3  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2b3  Mal-Let-7-P2b3a  Mgi-Let-7  Mml-Let-7-P2b3  Mmr-Let-7-P2b3  Mmu-Let-7-P2b3  Mom-Let-7  Mun-Let-7-P2b3  Npo-Let-7  Oan-Let-7-P2b3  Obi-Let-7  Ocu-Let-7-P2b3  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2b3  Pau-Let-7  Pbv-Let-7-P2b3  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2b3  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2b3  Tca-Let-7  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xtr-Let-7-P2b3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01015375.1: 432788-432865 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b3)		 Let-7-P2a3 QEPC01015375.1: 431920-431990 [+] UCSC Ensembl
Let-7-P2b3 QEPC01015375.1: 432788-432865 [+] UCSC Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
GGUUGAGUGUGAGCCUGGCCCCUGCUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUUUGUGCCCCAAUUCAGAGAUAACUAUACAACUUACUACUUUCCCUAGUGGGGGGAGAUGUUCCCGUUGGUCGU
Get precursor sequence
Structure
        10          20        30        40        50        60         
GGUUGAGUGUGAGCCUGG--|   UG      U                 U   GUGGGGUAGGGAUUUG 
                    CCCC  CUGGGG GAGGUAGUAAGUUGUAU GUU                \
                    GGGG  GAUCCC UUUCAUCAUUCAACAUA CAA                U
UGCUGGUUGCCCUUGUAGAG^   GU      -                 U   UAGAGACUUAACCCCG 
      130       120       110        100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Spt-Let-7-P2b3_5p (predicted)
mirBase accessionNone
Sequence 
0- UGAGGUAGUAAGUUGUAUUGUU -22
Get sequence
Star sequence

Spt-Let-7-P2b3_3p* (predicted)
mirBase accessionNone
Sequence 
57- CUAUACAACUUACUACUUUCC -78
Get sequence