MirGeneDB 2.1

MirGeneDB ID

Spt-Let-7-P2c1

Family name LET-7 (all species)
Seed GAGGUAG
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Let-7-P1b  Spt-Let-7-P1c  Spt-Let-7-P1d  Spt-Let-7-P2a1  Spt-Let-7-P2a2  Spt-Let-7-P2a3  Spt-Let-7-P2a4  Spt-Let-7-P2b1  Spt-Let-7-P2b2  Spt-Let-7-P2b3  Spt-Let-7-P2b4  Spt-Let-7-P2c2  Spt-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2c1  Ami-Let-7-P2c1  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c1  Cfa-Let-7-P2c1  Cgi-Let-7  Cli-Let-7-P2c1  Cmi-Let-7-P2c1  Cpi-Let-7-P2c1  Cpo-Let-7-P2c1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c1  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c1  Gga-Let-7-P2c1  Gja-Let-7-P2c1  Hme-Let-7  Hsa-Let-7-P2c1  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c1  Lgi-Let-7  Loc-Let-7-P2c1  Mdo-Let-7-P2c1  Mml-Let-7-P2c1  Mmu-Let-7-P2c1  Mun-Let-7-P2c1  Npo-Let-7  Oan-Let-7-P2c1  Obi-Let-7  Ocu-Let-7-P2c1  Ovu-Let-7  Pbv-Let-7-P2c1  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c1  Sha-Let-7-P2c1  Sko-Let-7  Spu-Let-7  Sto-Let-7-P2c1  Tca-Let-7  Tgu-Let-7-P2c1  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01004593.1: 1540183-1540258 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACUGCAGAAGACACCGUGGGUUCCUAGGAAGAGGUAGUAGGUUGCAUAGUUUUAGGUCAGGGAUGUUGCCCAACAAGGAGUUAACUAUACAACCUGCUGCCUUUCUUAGGGCUUUAUUAUUACAACAGGACCAUG
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Structure
        10           20        30        40        50        60        
AACUGCAGAAGACACCGU---|   U       A              C      UUAGGUCAGGGAUGU 
                     GGGU CCUAGGA GAGGUAGUAGGUUG AUAGUU               \
                     UUCG GGAUUCU UUCCGUCGUCCAAC UAUCAA               U
GUACCAGGACAACAUUAUUAU^   -       -              A      UUGAGGAACAACCCG 
    130       120        110        100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Let-7-P2c1_5p (predicted)

mirBase accessionNone
Sequence
0- AGAGGUAGUAGGUUGCAUAGUU -22
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Star sequence

Spt-Let-7-P2c1_3p* (predicted)

mirBase accessionNone
Sequence
55- CUAUACAACCUGCUGCCUUUC -76
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