MirGeneDB 2.1
MirGeneDB ID

Bta-Let-7-P2c1

Family name LET-7 (all species)
Seed GAGGUAG
Species Cow (Bos taurus)
MiRBase ID bta-let-7d
Paralogues Bta-Let-7-P1b  Bta-Let-7-P1c  Bta-Let-7-P1d  Bta-Let-7-P2a1  Bta-Let-7-P2a2  Bta-Let-7-P2a3  Bta-Let-7-P2b1  Bta-Let-7-P2b2  Bta-Let-7-P2b3  Bta-Let-7-P2c2  Bta-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2c1  Ami-Let-7-P2c1  Bge-Let-7  Bpl-Let-7  Cfa-Let-7-P2c1  Cgi-Let-7  Cli-Let-7-P2c1  Cmi-Let-7-P2c1  Cpi-Let-7-P2c1  Cpo-Let-7-P2c1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c1  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c1  Gga-Let-7-P2c1  Gja-Let-7-P2c1  Hme-Let-7  Hsa-Let-7-P2c1  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c1  Lgi-Let-7  Loc-Let-7-P2c1  Mdo-Let-7-P2c1  Mml-Let-7-P2c1  Mmu-Let-7-P2c1  Mun-Let-7-P2c1  Npo-Let-7  Oan-Let-7-P2c1  Obi-Let-7  Ocu-Let-7-P2c1  Ovu-Let-7  Pbv-Let-7-P2c1  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c1  Sha-Let-7-P2c1  Sko-Let-7  Spt-Let-7-P2c1  Spu-Let-7  Sto-Let-7-P2c1  Tca-Let-7  Tgu-Let-7-P2c1  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037335.1: 85452964-85453038 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2c1)		 Let-7-P2a1 NC_037335.1: 85450402-85450473 [+] UCSC Ensembl
Let-7-P2b1 NC_037335.1: 85450756-85450832 [+] UCSC Ensembl
Let-7-P2c1 NC_037335.1: 85452964-85453038 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACCAGCAAGAAAAAAAUGGGUUCCUAGGAAGAGGUAGUAGGUUGCAUAGUUUUCGGGCAGGGAUUUUGCCCACAAGGAGGUAACUAUACGACCUGCUGCCUUUCUUAGGGCCUUAUUAUACCACGGUAACCGGU
Get precursor sequence
Structure
        10          20        30        40        50        60       
GACCAGCAAGAAAAAAA--|   UU       A              C      UUCGGGCAGGGAUU 
                   UGGG  CCUAGGA GAGGUAGUAGGUUG AUAGUU              U
                   AUUC  GGAUUCU UUCCGUCGUCCAGC UAUCAA              U
UGGCCAAUGGCACCAUAUU^   CG       -              A      UGGAGGAACACCCG 
   130       120       110        100        90        80        70
Deep sequencing
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CommentThe 3'moR read in cow is consistent with this gene being classified as a Group 2 miRNA.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Let-7-P2c1_5p
mirBase accessionMIMAT0003810
Sequence 
0- AGAGGUAGUAGGUUGCAUAGUU -22
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Proposed targets TargetScanVert: bta-let-7d
Star sequence

Bta-Let-7-P2c1_3p*
mirBase accessionNone
Sequence 
54- CUAUACGACCUGCUGCCUUUC -75
Get sequence