MirGeneDB ID | Sto-Let-7-P2c1 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Let-7-P1a
Sto-Let-7-P1b
Sto-Let-7-P1c
Sto-Let-7-P2a1
Sto-Let-7-P2a2
Sto-Let-7-P2a3
Sto-Let-7-P2b2
Sto-Let-7-P2c2
Sto-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2c1
Ami-Let-7-P2c1
Bge-Let-7
Bta-Let-7-P2c1
Cfa-Let-7-P2c1
Cgi-Let-7
Cli-Let-7-P2c1
Cpi-Let-7-P2c1
Cpo-Let-7-P2c1
Cte-Let-7
Dan-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2c1
Dpu-Let-7
Ete-Let-7-P2c1
Gga-Let-7-P2c1
Hme-Let-7
Hsa-Let-7-P2c1
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Mdo-Let-7-P2c1
Mml-Let-7-P2c1
Mmu-Let-7-P2c1
Oan-Let-7-P2c1
Ocu-Let-7-P2c1
Pfl-Let-7
Pmi-Let-7
Rno-Let-7-P2c1
Sha-Let-7-P2c1
Sko-Let-7
Spu-Let-7
Tca-Let-7
Tgu-Let-7-P2c1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (miRNA_loci_genome) |
BFAA01002606.1: 66711-66785 [+]
|
Precursor (pre-Mir +30nt flank) |
CAAUGUGGAGAAUAUAGUGAGCUCCUGGGUAGAGGUAGUAGGUUGCAUAGUUCGAGGACUGAAAUUUUGGCCCAAAGGAGAUAACUAUACAACUUGCUGCCUUUCCUAGGGCAUCAUACUGAACAUCACAACUGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAAUGUGGAGAAUAUAG-- -| U U C CGAGGACUGAAAUU
UGA GC CCUGGG AGAGGUAGUAGGUUG AUAGUU U
ACU CG GGAUCC UUUCCGUCGUUCAAC UAUCAA U
GGUCAACACUACAAGUCAU A^ - - A UAGAGGAAACCCGG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Sto-Let-7-P2c1_5p |
MirBase accession | None |
Sequence |
0- AGAGGUAGUAGGUUGCAUAGUU -22
Get sequence
|
Star sequence |
Sto-Let-7-P2c1_3p* |
MirBase accession | None |
Sequence |
54- CUAUACAACUUGCUGCCUUUC -75
Get sequence
|