MirGeneDB 2.1

MirGeneDB ID

Hsa-Let-7-P2c1

Family name LET-7 (all species)
Seed GAGGUAG
Species Human (Homo sapiens)
MiRBase ID hsa-let-7d
Paralogues Hsa-Let-7-P1b  Hsa-Let-7-P1c  Hsa-Let-7-P1d  Hsa-Let-7-P2a1  Hsa-Let-7-P2a2  Hsa-Let-7-P2a3  Hsa-Let-7-P2b1  Hsa-Let-7-P2b2  Hsa-Let-7-P2b3  Hsa-Let-7-P2c2  Hsa-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2c1  Ami-Let-7-P2c1  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c1  Cfa-Let-7-P2c1  Cgi-Let-7  Cli-Let-7-P2c1  Cmi-Let-7-P2c1  Cpi-Let-7-P2c1  Cpo-Let-7-P2c1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c1  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c1  Gga-Let-7-P2c1  Gja-Let-7-P2c1  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c1  Lgi-Let-7  Loc-Let-7-P2c1  Mdo-Let-7-P2c1  Mml-Let-7-P2c1  Mmu-Let-7-P2c1  Mun-Let-7-P2c1  Npo-Let-7  Oan-Let-7-P2c1  Obi-Let-7  Ocu-Let-7-P2c1  Ovu-Let-7  Pbv-Let-7-P2c1  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c1  Sha-Let-7-P2c1  Sko-Let-7  Spt-Let-7-P2c1  Spu-Let-7  Sto-Let-7-P2c1  Tca-Let-7  Tgu-Let-7-P2c1  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(hg38)
chr9: 94178841-94178915 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2c1)
Let-7-P2a1 chr9: 94175962-94176033 [+] UCSC Ensembl
Let-7-P2b1 chr9: 94176353-94176429 [+] UCSC Ensembl
Let-7-P2c1 chr9: 94178841-94178915 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCAAGAAAAAAAAAAUGGGUUCCUAGGAAGAGGUAGUAGGUUGCAUAGUUUUAGGGCAGGGAUUUUGCCCACAAGGAGGUAACUAUACGACCUGCUGCCUUUCUUAGGGCCUUAUUAUUCACCGAUAACCUGU
Get precursor sequence
Structure
        10          20        30        40        50        60       
CAGCAAGAAAAAAAAAA--|   UU       A              C      UUAGGGCAGGGAUU 
                   UGGG  CCUAGGA GAGGUAGUAGGUUG AUAGUU              U
                   AUUC  GGAUUCU UUCCGUCGUCCAGC UAUCAA              U
UGUCCAAUAGCCACUUAUU^   CG       -              A      UGGAGGAACACCCG 
   130       120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Mature sequence

Hsa-Let-7-P2c1_5p

mirBase accessionMIMAT0000065
Sequence
0- AGAGGUAGUAGGUUGCAUAGUU -22
Get sequence
Proposed targets microrna.org: MIMAT0000065
TargetScanVert: hsa-let-7d-5p
TargetMiner: hsa-let-7d-5p
miRDB: MIMAT0000065
Star sequence

Hsa-Let-7-P2c1_3p*

mirBase accessionMIMAT0004484
Sequence
54- CUAUACGACCUGCUGCCUUUC -75
Get sequence
Proposed targets microrna.org: MIMAT0004484
TargetScanVert: hsa-let-7d-3p
TargetMiner: hsa-let-7d-3p
miRDB: MIMAT0004484