MirGeneDB ID | Dno-Let-7-P2c1 |
Family name |
LET-7 (all species) |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-let-7d
|
Paralogues |
Dno-Let-7-P1c
Dno-Let-7-P1d
Dno-Let-7-P2a1
Dno-Let-7-P2a2
Dno-Let-7-P2a3
Dno-Let-7-P2b1
Dno-Let-7-P2b2
Dno-Let-7-P2b3
Dno-Let-7-P2c2
Dno-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2c1
Aga-Let-7
Agr-Let-7
Ami-Let-7-P2c1
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P2c1
Cfa-Let-7-P2c1
Cja-Let-7-P2c1
Cli-Let-7-P2c1
Cmi-Let-7-P2c1
Cpi-Let-7-P2c1
Cpo-Let-7-P2c1
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P2c1
Egr-Let-7
Esc-Let-7
Ete-Let-7-P2c1
Gga-Let-7-P2c1
Gja-Let-7-P2c1
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P2c1
Isc-Let-7
Laf-Let-7-P2c1
Lan-Let-7
Lch-Let-7-P2c1
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P2c1
Mdo-Let-7-P2c1
Mgi-Let-7
Mml-Let-7-P2c1
Mmr-Let-7-P2c1
Mmu-Let-7-P2c1
Mom-Let-7
Mun-Let-7-P2c1
Neu-Let-7-P2c1
Npo-Let-7
Oan-Let-7-P2c1
Obi-Let-7
Ocu-Let-7-P2c1
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P2c1
Pau-Let-7
Pbv-Let-7-P2c1
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P2c1
Rph-Let-7
Sha-Let-7-P2c1
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P2c1
Spu-Let-7
Sro-Let-7
Sto-Let-7-P2c1
Tca-Let-7
Tgu-Let-7-P2c1
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (dasNov3) |
JH563897: 148047-148121 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Let-7-P2c1) |
Let-7-P2c1
JH563897: 148047-148121 [-]
UCSC
Ensembl
Let-7-P2b1
JH563897: 150195-150271 [-]
UCSC
Ensembl
Let-7-P2a1
JH563897: 150586-150657 [-]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
ACCAGCAAGAAAACAAAUGGGUUCCUAGGAAGAGGUAGUAGGUUGCAUAGUUUUGGGGCAGGGAUUUUGCCCACAAGGAGGUAACUAUACGACCUGCUGCCUUUCUUAGGGCCUUAUUGUUCCACGGUAACCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACCAGCAAGAAAACAAA--| UU A C UUGGGGCAGGGAUU
UGGG CCUAGGA GAGGUAGUAGGUUG AUAGUU U
AUUC GGAUUCU UUCCGUCGUCCAGC UAUCAA U
UGUCCAAUGGCACCUUGUU^ CG - A UGGAGGAACACCCG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | This is a Group 2 in human according to Kim et al. (2017) but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dno-Let-7-P2c1_5p |
mirBase accession | MIMAT0047480 |
Sequence |
0- AGAGGUAGUAGGUUGCAUAGUU -22
Get sequence
|
Star sequence |
Dno-Let-7-P2c1_3p* |
mirBase accession | MIMAT0047481 |
Sequence |
54- CUAUACGACCUGCUGCCUUUC -75
Get sequence
|