MirGeneDB ID | Sto-Let-7-P2b3 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Let-7-P1b
Sto-Let-7-P1c
Sto-Let-7-P1d
Sto-Let-7-P2a1
Sto-Let-7-P2a2
Sto-Let-7-P2a3
Sto-Let-7-P2b2
Sto-Let-7-P2c1
Sto-Let-7-P2c2
Sto-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b3
Ami-Let-7-P2b3
Bge-Let-7
Bpl-Let-7
Bta-Let-7-P2b3
Cfa-Let-7-P2b3
Cgi-Let-7
Cpi-Let-7-P2b3
Cpo-Let-7-P2b3
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2b3
Dpu-Let-7
Dre-Let-7-P2b3a
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Ete-Let-7-P2b3
Gja-Let-7-P2b3
Gmo-Let-7-P2b3a
Gmo-Let-7-P2b3b
Hme-Let-7
Hsa-Let-7-P2b3
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Loc-Let-7-P2b3
Mal-Let-7-P2b3a
Mml-Let-7-P2b3
Mmu-Let-7-P2b3
Mun-Let-7-P2b3
Npo-Let-7
Oan-Let-7-P2b3
Obi-Let-7
Ocu-Let-7-P2b3
Ovu-Let-7
Pbv-Let-7-P2b3
Pfl-Let-7
Pmi-Let-7
Rno-Let-7-P2b3
Sko-Let-7
Spt-Let-7-P2b3
Spu-Let-7
Tca-Let-7
Tni-Let-7-P2b3a
Tni-Let-7-P2b3b
Xbo-Let-7
Xla-Let-7-P2b3c
Xla-Let-7-P2b3d
Xtr-Let-7-P2b3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_003427355_STO_add) |
BFAA01059154.1: 1802-1899 [+]
|
Precursor (pre-Mir +30nt flank) |
GAGUGACUGGUUCGUUAUGCUUCGGCACGCUGAGGUAGUAGGUUGUAUAGUUGUAGGGCAGUGAUUUCCCUCUUAGUUAUUUUUCUACGUUGCCUGCUUGGAGAUAACGAUACAACCUACUGCCUUCCUCGCUGAGCAGUCAAGCAACCAACAGGGGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GAGUGACUGGUUCGUUA---| U ACGCU A GUAGGGCAGUGAUUUCCCUCUUAGUU
UGCU CGGC GAGGUAGUAGGUUGUAU GUU \
ACGA GUCG UUCCGUCAUCCAACAUA CAA A
AGGGGACAACCAACGAACUG^ - CUCC- G UAGAGGUUCGUCCGUUGCAUCUUUUU
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Sto-Let-7-P2b3_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Star sequence |
Sto-Let-7-P2b3_3p* |
mirBase accession | None |
Sequence |
77- CGAUACAACCUACUGCCUUCC -98
Get sequence
|