MirGeneDB 3.0
MirGeneDB ID

Xla-Let-7-P2b3d

Family name LET-7 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-98
Paralogues Xla-Let-7-P1b3  Xla-Let-7-P1b4  Xla-Let-7-P1c3  Xla-Let-7-P1c4  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xla-Let-7-P2a2c  Xla-Let-7-P2a2d  Xla-Let-7-P2a3d  Xla-Let-7-P2b2c  Xla-Let-7-P2b2d  Xla-Let-7-P2b3c  Xla-Let-7-P2c2  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xla-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2b3  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2b3  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2b3  Cfa-Let-7-P2b3  Cja-Let-7-P2b3  Cpi-Let-7-P2b3  Cpo-Let-7-P2b3  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b3  Dpu-Let-7  Dre-Let-7-P2b3a  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2b3  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2b3  Gja-Let-7-P2b3  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2b3  Isc-Let-7  Laf-Let-7-P2b3  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2b3  Mal-Let-7-P2b3a  Mgi-Let-7  Mml-Let-7-P2b3  Mmr-Let-7-P2b3  Mmu-Let-7-P2b3  Mom-Let-7  Mun-Let-7-P2b3  Npo-Let-7  Oan-Let-7-P2b3  Obi-Let-7  Ocu-Let-7-P2b3  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2b3  Pau-Let-7  Pbv-Let-7-P2b3  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2b3  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2b3  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2b3  Tca-Let-7  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Tur-Let-7  War-Let-7  Xbo-Let-7  Xtr-Let-7-P2b3 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030739.1: 36825865-36825942 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b3d)		 Let-7-P2b3d NC_030739.1: 36825865-36825942 [-] UCSC Ensembl
Let-7-P2a3d NC_030739.1: 36826128-36826198 [-] UCSC Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
CCUGCAGUACAUUGUCUGCCUUCUUCAGGAUGAGGUAGUAAGUUGUAUUGUUGUGGGGGUGUUUCAUUUCCCCAAAUUAGGAGAUAACUAUACAGUUUACUGCCUUCCCUGUGGCAUGGUAAUUUAAUUCUGUGUGAC
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Structure
        10         20         30        40        50        60         
CCUGCAGUACAUUGUCU-   UU-| U    AU          GU     U   GUGGGGGUGUUUCAUU 
                  GCC   CU CAGG  GAGGUAGUAA  UGUAU GUU                \
                  UGG   GG GUCC  UUCCGUCAUU  ACAUA CAA                U
CAGUGUGUCUUAAUUUAA   UAC^ U    C-          UG     U   UAGAGGAUUAAACCCC 
      130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
Em
Mature sequence

Xla-Let-7-P2b3d_5p
mirBase accessionMIMAT0046617
Sequence 
0- UGAGGUAGUAAGUUGUAUUGUU -22
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Star sequence

Xla-Let-7-P2b3d_3p*
mirBase accessionMIMAT0046618
Sequence 
57- CUAUACAGUUUACUGCCUUCC -78
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