Let-7-P2b3

MirGeneDB ID

Bta-Let-7-P2b3

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-98

Paralogues

Bta-Let-7-P1b Bta-Let-7-P1c Bta-Let-7-P1d Bta-Let-7-P2a1 Bta-Let-7-P2a2 Bta-Let-7-P2a3 Bta-Let-7-P2b1 Bta-Let-7-P2b2 Bta-Let-7-P2c1 Bta-Let-7-P2c2 Bta-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2b3 Ami-Let-7-P2b3 Bge-Let-7 Bpl-Let-7 Cfa-Let-7-P2b3 Cgi-Let-7 Cpi-Let-7-P2b3 Cpo-Let-7-P2b3 Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2b3 Dpu-Let-7 Dre-Let-7-P2b3a Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P2b3 Gja-Let-7-P2b3 Gmo-Let-7-P2b3a Gmo-Let-7-P2b3b Hme-Let-7 Hsa-Let-7-P2b3 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Loc-Let-7-P2b3 Mal-Let-7-P2b3a Mml-Let-7-P2b3 Mmu-Let-7-P2b3 Mun-Let-7-P2b3 Npo-Let-7 Oan-Let-7-P2b3 Obi-Let-7 Ocu-Let-7-P2b3 Ovu-Let-7 Pbv-Let-7-P2b3 Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P2b3 Sko-Let-7 Spt-Let-7-P2b3 Spu-Let-7 Sto-Let-7-P2b3 Tca-Let-7 Tni-Let-7-P2b3a Tni-Let-7-P2b3b Xbo-Let-7 Xla-Let-7-P2b3c Xla-Let-7-P2b3d Xtr-Let-7-P2b3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 90985665-90985743 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2b3)

Let-7-P2b3 NC_037357.1: 90985665-90985743 [-] UCSC Ensembl
Let-7-P2a3 NC_037357.1: 90986555-90986625 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUGCUAGAGGACUCUGCUCAUGCUGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUUUUAGGCCCCAAUUUGAAGAUAACUAUACAACUUACUACUUUCCCUGGUGUGUAGCACAUUCACAUUUAGUCUU

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Structure

        10         20         30        40        50        60         
UGUUGCUAGAGGACUCU-   -|    UG   U                 U   GUGGGGUAGGGAUUUU 
                  GCU CAUGC  GGG GAGGUAGUAAGUUGUAU GUU                A
                  CGA GUGUG  CCC UUUCAUCAUUCAACAUA CAA                G
UUCUGAUUUACACUUACA   U^    GU   -                 U   UAGAAGUUUAACCCCG 
       130       120       110        100        90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Let-7-P2b3_5p

mirBase accession

MIMAT0003809

Sequence

0- UGAGGUAGUAAGUUGUAUUGUU -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-98

Star sequence

Bta-Let-7-P2b3_3p*

mirBase accession

None

Sequence

58- CUAUACAACUUACUACUUUCC -79

Get sequence