MirGeneDB ID | Bta-Let-7-P2c2 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-let-7i
|
Paralogues |
Bta-Let-7-P1b
Bta-Let-7-P1c
Bta-Let-7-P1d
Bta-Let-7-P2a1
Bta-Let-7-P2a2
Bta-Let-7-P2a3
Bta-Let-7-P2b1
Bta-Let-7-P2b2
Bta-Let-7-P2b3
Bta-Let-7-P2c1
Bta-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2c2
Ami-Let-7-P2c2
Bge-Let-7
Bpl-Let-7
Cfa-Let-7-P2c2
Cgi-Let-7
Cli-Let-7-P2c2
Cmi-Let-7-P2c2
Cpi-Let-7-P2c2
Cpo-Let-7-P2c2
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2c2
Dpu-Let-7
Dre-Let-7-P2c2b
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Ete-Let-7-P2c2
Gga-Let-7-P2c2
Gja-Let-7-P2c2
Gmo-Let-7-P2c2a
Gmo-Let-7-P2c2b
Hme-Let-7
Hsa-Let-7-P2c2
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2c2
Lgi-Let-7
Loc-Let-7-P2c2
Mal-Let-7-P2c2b
Mdo-Let-7-P2c2
Mml-Let-7-P2c2
Mmu-Let-7-P2c2
Mun-Let-7-P2c2
Npo-Let-7
Oan-Let-7-P2c2
Obi-Let-7
Ocu-Let-7-P2c2
Ovu-Let-7
Pbv-Let-7-P2c2
Pfl-Let-7
Pmi-Let-7
Rno-Let-7-P2c2
Sha-Let-7-P2c2
Sko-Let-7
Spt-Let-7-P2c2
Spu-Let-7
Sto-Let-7-P2c2
Tca-Let-7
Tgu-Let-7-P2c2
Tni-Let-7-P2c2a
Tni-Let-7-P2c2b
Xbo-Let-7
Xla-Let-7-P2c2
Xtr-Let-7-P2c2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037332.1: 50983056-50983132 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGGUGCCUCCCCGACACCAUGGCCCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGUGCUGGUGAUGCUCAGCGCCGCGGAGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCGGUGCCUCCCCGACA----| UG C U U GGUCGGGUUGUGACA
CCA GC CUGGC GAGGUAGUAGUUUGUGC GUU U
GGU CG GAUCG UUCCGUCAUCGAACGCG CAA U
GGAGGCGCCGCGACUCGUAGU^ -- U - U UAGAGGUGUCGCCCG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Mature sequence |
Bta-Let-7-P2c2_5p |
mirBase accession | MIMAT0003851 |
Sequence |
0- UGAGGUAGUAGUUUGUGCUGUU -22
Get sequence
|
Proposed targets |
TargetScanVert: bta-let-7i
|
Star sequence |
Bta-Let-7-P2c2_3p* |
mirBase accession | None |
Sequence |
56- CUGCGCAAGCUACUGCCUUGC -77
Get sequence
|