MirGeneDB ID | Pab-Let-7-P2c2 |
Family name |
LET-7 (all species) |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Let-7-P1b
Pab-Let-7-P1c
Pab-Let-7-P1d
Pab-Let-7-P2a1
Pab-Let-7-P2a2
Pab-Let-7-P2a3
Pab-Let-7-P2b1
Pab-Let-7-P2b2
Pab-Let-7-P2b3
Pab-Let-7-P2c1
Pab-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2c2
Aga-Let-7
Agr-Let-7
Ami-Let-7-P2c2
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P2c2
Cfa-Let-7-P2c2
Cja-Let-7-P2c2
Cli-Let-7-P2c2
Cmi-Let-7-P2c2
Cpi-Let-7-P2c2
Cpo-Let-7-P2c2
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2c2
Dpu-Let-7
Dre-Let-7-P2c2b
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P2c2
Egr-Let-7
Esc-Let-7
Ete-Let-7-P2c2
Gga-Let-7-P2c2
Gja-Let-7-P2c2
Gmo-Let-7-P2c2a
Gmo-Let-7-P2c2b
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P2c2
Isc-Let-7
Laf-Let-7-P2c2
Lan-Let-7
Lch-Let-7-P2c2
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P2c2
Mal-Let-7-P2c2b
Mdo-Let-7-P2c2
Mgi-Let-7
Mml-Let-7-P2c2
Mmr-Let-7-P2c2
Mmu-Let-7-P2c2
Mom-Let-7
Mun-Let-7-P2c2
Neu-Let-7-P2c2
Npo-Let-7
Oan-Let-7-P2c2
Obi-Let-7
Ocu-Let-7-P2c2
Ofu-Let-7
Ovu-Let-7
Pau-Let-7
Pbv-Let-7-P2c2
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P2c2
Rph-Let-7
Sha-Let-7-P2c2
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P2c2
Spu-Let-7
Sro-Let-7
Sto-Let-7-P2c2
Tca-Let-7
Tgu-Let-7-P2c2
Tni-Let-7-P2c2a
Tni-Let-7-P2c2b
Tur-Let-7
War-Let-7
Xbo-Let-7
Xla-Let-7-P2c2
Xtr-Let-7-P2c2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054689.2: 60674949-60675025 [+]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
CCCGUGCCUCCCCGACACCAUGGCCCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGUGCUGGUGAUGCUCAGCGCCGCGGAGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCGUGCCUCCCCGACA----| UG C U U GGUCGGGUUGUGACA
CCA GC CUGGC GAGGUAGUAGUUUGUGC GUU U
GGU CG GAUCG UUCCGUCAUCGAACGCG CAA U
GGAGGCGCCGCGACUCGUAGU^ -- U - U UAGAGGUGUCGCCCG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Although there is a templated thymidine at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' uridine is supported by the CAGE data from de Rie et al. (2017). All other vertebrates are treated accordingly. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Let-7-P2c2_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGUUUGUGCUGUU -22
Get sequence
|
Star sequence |
Pab-Let-7-P2c2_3p* |
mirBase accession | None |
Sequence |
56- CUGCGCAAGCUACUGCCUUGC -77
Get sequence
|