MirGeneDB

MirGeneDB ID

Bta-Let-7-P1b

Family name LET-7 (all species)
Seed GAGGUAG
Species Cow (Bos taurus)
MiRBase ID bta-let-7e
Paralogues Bta-Let-7-P1a  Bta-Let-7-P1c  Bta-Let-7-P2a1  Bta-Let-7-P2a2  Bta-Let-7-P2a3  Bta-Let-7-P2b1  Bta-Let-7-P2b2  Bta-Let-7-P2b3  Bta-Let-7-P2c1  Bta-Let-7-P2c2  Bta-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1b  Ami-Let-7-P1b  Bge-Let-7  Cfa-Let-7-P1b  Cgi-Let-7  Cin-Let-7-P1  Cpi-Let-7-P1b  Cpo-Let-7-P1b  Cte-Let-7  Dan-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P1b1  Dre-Let-7-P1b2  Ete-Let-7-P1b  Hme-Let-7  Hsa-Let-7-P1b  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Mml-Let-7-P1b  Mmu-Let-7-P1b  Oan-Let-7-P1b  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1b  Sha-Let-7-P1b  Sko-Let-7  Spu-Let-7  Sto-Let-7-P1b  Tca-Let-7  Xtr-Let-7-P1b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(bosTau8)
chr18: 58015043-58015109 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Let-7-P1b)
Mir-10-P2b chr18: 58014874-58014933 [+] UCSC Ensembl
Let-7-P1b chr18: 58015043-58015109 [+] UCSC Ensembl
Mir-10-P3b chr18: 58015549-58015608 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUCUGUCCACCUGCCGCGCCCCCCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUCACUAUACGGCCUCCUAGCUUUCCCCAGGCUGCGCCCUGCACGGGACGGCCCGG
Get precursor sequence
Structure
        10          20        30        40        50        60   
CUGUCUGUCCACCUGCC--|   CC  C   CU   G                UGAGGAGGACA 
                   GCGC  CC GGG  GAG UAGGAGGUUGUAUAGU           \
                   CGCG  GG CCC  UUC AUCCUCCGGCAUAUCA           C
GGCCCGGCAGGGCACGUCC^   UC  A   CU   G                CUAGAGGAACC 
     120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Let-7-P1b_5p

MirBase accessionMIMAT0004333
Sequence
0- UGAGGUAGGAGGUUGUAUAGUU -22
Get sequence
Validated targets TargetScanVert: bta-let-7e
Star sequence

Bta-Let-7-P1b_3p*

MirBase accessionNone
Sequence
45- CUAUACGGCCUCCUAGCUUUCC -67
Get sequence