Let-7-P1b1

MirGeneDB ID

Tni-Let-7-P1b1

Family name

LET-7 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-let-7d

Paralogues

Tni-Let-7-P1b2 Tni-Let-7-P1d1 Tni-Let-7-P1d2 Tni-Let-7-P2a2a Tni-Let-7-P2a2b Tni-Let-7-P2a3a Tni-Let-7-P2a3b Tni-Let-7-P2a4a Tni-Let-7-P2a4b Tni-Let-7-P2b2a Tni-Let-7-P2b2b Tni-Let-7-P2b3a Tni-Let-7-P2b3b Tni-Let-7-P2b4a Tni-Let-7-P2b4b Tni-Let-7-P2c2a Tni-Let-7-P2c2b Tni-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1b Aga-Let-7 Agr-Let-7 Ami-Let-7-P1b Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1b Cfa-Let-7-P1b Cin-Let-7-P1 Cja-Let-7-P1b Cpi-Let-7-P1b Cpo-Let-7-P1b Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dre-Let-7-P1b1 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1b Egr-Let-7 Esc-Let-7 Ete-Let-7-P1b Gja-Let-7-P1b Gmo-Let-7-P1b1 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1b Isc-Let-7 Laf-Let-7-P1b Lan-Let-7 Lch-Let-7-P1b Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1b Mal-Let-7-P1b1 Mdo-Let-7-P1b Mgi-Let-7 Mml-Let-7-P1b Mmr-Let-7-P1b Mmu-Let-7-P1b Mom-Let-7 Mun-Let-7-P1b Npo-Let-7 Oan-Let-7-P1b Obi-Let-7 Ocu-Let-7-P1b Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1b Pau-Let-7 Pbv-Let-7-P1b Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1b Rph-Let-7 Sha-Let-7-P1b Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1b Spu-Let-7 Sro-Let-7 Sto-Let-7-P1b Tca-Let-7 Tur-Let-7 War-Let-7 Xbo-Let-7 Xtr-Let-7-P1b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

8: 6075965-6076034 [-] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

GAGCAGCUCUACAGUCUGUGCUCUGCAGUGUGAGGUAGUUGGUUGUAUGGUUUCGCAUAAUAAACAGCACGGAGAUAACUGUACAACCUUCUAGCUUUCCCUGCGGAGUCACUUCAUGCCACAUCCAAGG

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Structure

        10         20         30        40        50        60    
GAGCAGCUCUACAGUCU-   -|       UGU   G   UU            UCGCAUAAUAA 
                  GUG CUCUGCAG   GAG UAG  GGUUGUAUGGUU           A
                  CAC GAGGCGUC   UUC AUC  CCAACAUGUCAA           C
GGAACCUACACCGUACUU   U^       CCU   G   UU            UAGAGGCACGA 
.       120       110       100        90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Let-7-P1b1_5p

mirBase accession

MIMAT0002996

Sequence

0- UGAGGUAGUUGGUUGUAUGGUU -22

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Star sequence

Tni-Let-7-P1b1_3p* (predicted)

mirBase accession

None

Sequence

48- CUGUACAACCUUCUAGCUUUCC -70

Get sequence