MirGeneDB 2.1

MirGeneDB ID

Mdo-Let-7-P1b

Family name LET-7 (all species)
Seed GAGGUAG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID
Paralogues Mdo-Let-7-P1d  Mdo-Let-7-P2a1  Mdo-Let-7-P2a2  Mdo-Let-7-P2a3  Mdo-Let-7-P2b1  Mdo-Let-7-P2b2  Mdo-Let-7-P2c1  Mdo-Let-7-P2c2  Mdo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1b  Ami-Let-7-P1b  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1b  Cfa-Let-7-P1b  Cgi-Let-7  Cin-Let-7-P1  Cpi-Let-7-P1b  Cpo-Let-7-P1b  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1b  Gja-Let-7-P1b  Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Hme-Let-7  Hsa-Let-7-P1b  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1b  Lgi-Let-7  Loc-Let-7-P1b  Mal-Let-7-P1b1  Mal-Let-7-P1b2  Mml-Let-7-P1b  Mmu-Let-7-P1b  Mun-Let-7-P1b  Npo-Let-7  Oan-Let-7-P1b  Obi-Let-7  Ocu-Let-7-P1b  Ovu-Let-7  Pbv-Let-7-P1b  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1b  Sha-Let-7-P1b  Sko-Let-7  Spt-Let-7-P1b  Spu-Let-7  Sto-Let-7-P1b  Tca-Let-7  Tni-Let-7-P1b1  Tni-Let-7-P1b2  Xbo-Let-7  Xla-Let-7-P1b3  Xla-Let-7-P1b4  Xtr-Let-7-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(monDom5_add)
gnl|ti|369864707: 266-332 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCCUGUCCACCUCGUGCGCUGCCCGGGCUGAGGUAGUAGGUUGUACAGUUGAGAAGGACACCUGUGGAGAUAACUGUACGACUCACUAGCUUUCCCCAGGCUGUGCCCUGCACCGGAGGAGGAGG
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Structure
        10          20        30        40        50        60   
GGCCCUGUCCACCUCGU--|   U   C   CU   G    AG           GAGAAGGACA 
                   GCGC GCC GGG  GAG UAGU  GUUGUACAGUU          \
                   CGUG CGG CCC  UUC AUCA  CAGCAUGUCAA          C
GGAGGAGGAGGCCACGUCC^   U   A   CU   G    CU           UAGAGGUGUC 
     120       110       100        90        80        70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Let-7-P1b_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUAGGUUGUACAGUU -22
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Star sequence

Mdo-Let-7-P1b_3p*

mirBase accessionNone
Sequence
45- CUGUACGACUCACUAGCUUUCC -67
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