Let-7-P1b

MirGeneDB ID

Ami-Let-7-P1b

Family name

LET-7 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-let-7c-2

Paralogues

Ami-Let-7-P1c Ami-Let-7-P1d Ami-Let-7-P2a1 Ami-Let-7-P2a2 Ami-Let-7-P2a3 Ami-Let-7-P2a4 Ami-Let-7-P2b1 Ami-Let-7-P2b2 Ami-Let-7-P2b3 Ami-Let-7-P2b4 Ami-Let-7-P2c1 Ami-Let-7-P2c2 Ami-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1b Aga-Let-7 Agr-Let-7 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1b Cfa-Let-7-P1b Cin-Let-7-P1 Cja-Let-7-P1b Cpi-Let-7-P1b Cpo-Let-7-P1b Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dre-Let-7-P1b1 Dre-Let-7-P1b2 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1b Egr-Let-7 Esc-Let-7 Ete-Let-7-P1b Gja-Let-7-P1b Gmo-Let-7-P1b1 Gmo-Let-7-P1b2 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1b Isc-Let-7 Laf-Let-7-P1b Lan-Let-7 Lch-Let-7-P1b Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1b Mal-Let-7-P1b1 Mal-Let-7-P1b2 Mdo-Let-7-P1b Mgi-Let-7 Mml-Let-7-P1b Mmr-Let-7-P1b Mmu-Let-7-P1b Mom-Let-7 Mun-Let-7-P1b Npo-Let-7 Oan-Let-7-P1b Obi-Let-7 Ocu-Let-7-P1b Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1b Pau-Let-7 Pbv-Let-7-P1b Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1b Rph-Let-7 Sha-Let-7-P1b Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1b Spu-Let-7 Sro-Let-7 Sto-Let-7-P1b Tca-Let-7 Tni-Let-7-P1b1 Tni-Let-7-P1b2 Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P1b3 Xla-Let-7-P1b4 Xtr-Let-7-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017714097.1: 238124-238190 [-] UCSC

Clustered miRNAs
(< 50kb from Let-7-P1b)

Mir-10-P3b NW_017714097.1: 234135-234193 [-] UCSC
Let-7-P1b NW_017714097.1: 238124-238190 [-] UCSC
Mir-10-P2b NW_017714097.1: 238463-238519 [-] UCSC

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

CCACCCCCUGCUGUUGGGUGGGGGCCGGGGUGAGGUAGUAGGUUGUAUGGUUUAGAGUCACACCCCCGGAGAUAACUGUACAGCCUCCUAGCUUUCCCCGCGCCCCCCCAGUGCCUCCCAGUGCUUC

Get precursor sequence

Structure

        10         20         30        40        50        60   
CCACCCCCUGCUGUUGGGU-      -|    U   G   U             UAGAGUCACA 
                    GGGGGC CGGGG GAG UAG AGGUUGUAUGGUU          \
                    CCCCCG GCCCC UUC AUC UCCGACAUGUCAA          C
CUUCGUGACCCUCCGUGACC      C^    U   G   C             UAGAGGCCCC 
     120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Let-7-P1b_5p

mirBase accession

MIMAT0038005

Sequence

0- UGAGGUAGUAGGUUGUAUGGUU -22

Get sequence

Star sequence

Ami-Let-7-P1b_3p*

mirBase accession

MIMAT0038007

Sequence

45- CUGUACAGCCUCCUAGCUUUCC -67

Get sequence