MirGeneDB 2.1

MirGeneDB ID

Mal-Let-7-P1b2

Family name LET-7 (all species)
Seed GAGGUAG
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Let-7-P1b1  Mal-Let-7-P1c2  Mal-Let-7-P1d1  Mal-Let-7-P1d2  Mal-Let-7-P2a1a  Mal-Let-7-P2a2a  Mal-Let-7-P2a2b  Mal-Let-7-P2a3a  Mal-Let-7-P2a3b  Mal-Let-7-P2a4a  Mal-Let-7-P2a4b  Mal-Let-7-P2b1a  Mal-Let-7-P2b2a  Mal-Let-7-P2b2b  Mal-Let-7-P2b3a  Mal-Let-7-P2b4a  Mal-Let-7-P2b4b  Mal-Let-7-P2c2b  Mal-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1b  Ami-Let-7-P1b  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1b  Cfa-Let-7-P1b  Cgi-Let-7  Cin-Let-7-P1  Cpi-Let-7-P1b  Cpo-Let-7-P1b  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P1b2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1b  Gja-Let-7-P1b  Gmo-Let-7-P1b2  Hme-Let-7  Hsa-Let-7-P1b  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1b  Lgi-Let-7  Loc-Let-7-P1b  Mdo-Let-7-P1b  Mml-Let-7-P1b  Mmu-Let-7-P1b  Mun-Let-7-P1b  Npo-Let-7  Oan-Let-7-P1b  Obi-Let-7  Ocu-Let-7-P1b  Ovu-Let-7  Pbv-Let-7-P1b  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1b  Sha-Let-7-P1b  Sko-Let-7  Spt-Let-7-P1b  Spu-Let-7  Sto-Let-7-P1b  Tca-Let-7  Tni-Let-7-P1b2  Xbo-Let-7  Xtr-Let-7-P1b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884998.1: 414837-414906 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAUUGACCCUGCUCCGGUGCUCUGCAGUGUGAGGUAGUUGGUUGUAUGGUUUCGCAUAAUAAACAGCUUGGAGAUAACUGUACAACCUUCUAGCUUUCCCUGCGGUGUCACCCAGACUUCACACAAACA
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Structure
        10         20         30        40        50        60    
GCAUUGACCCUGCUCCG-   -|U      UGU   G   UU            UCGCAUAAUAA 
                  GUG C CUGCAG   GAG UAG  GGUUGUAUGGUU           A
                  CAC G GGCGUC   UUC AUC  CCAACAUGUCAA           C
ACAAACACACUUCAGACC   U^U      CCU   G   UU            UAGAGGUUCGA 
.       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Let-7-P1b2_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUUGGUUGUAUGGUU -22
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Star sequence

Mal-Let-7-P1b2_3p*

mirBase accessionNone
Sequence
48- CUGUACAACCUUCUAGCUUUCC -70
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