MirGeneDB ID | Mal-Let-7-P2b4b |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Let-7-P1b1
Mal-Let-7-P1b2
Mal-Let-7-P1c2
Mal-Let-7-P1d1
Mal-Let-7-P1d2
Mal-Let-7-P2a1a
Mal-Let-7-P2a2a
Mal-Let-7-P2a2b
Mal-Let-7-P2a3a
Mal-Let-7-P2a3b
Mal-Let-7-P2a4a
Mal-Let-7-P2a4b
Mal-Let-7-P2b1a
Mal-Let-7-P2b2a
Mal-Let-7-P2b2b
Mal-Let-7-P2b3a
Mal-Let-7-P2b4a
Mal-Let-7-P2c2b
Mal-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b4
Ami-Let-7-P2b4
Bge-Let-7
Bpl-Let-7
Cgi-Let-7
Cli-Let-7-P2b4
Cmi-Let-7-P2b4
Cpi-Let-7-P2b4
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dre-Let-7-P2b4a
Dre-Let-7-P2b4b
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Gga-Let-7-P2b4
Gja-Let-7-P2b4
Gmo-Let-7-P2b4a
Gmo-Let-7-P2b4b
Hme-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2b4
Lgi-Let-7
Loc-Let-7-P2b4
Mun-Let-7-P2b4
Npo-Let-7
Oan-Let-7-P2b4
Obi-Let-7
Ovu-Let-7
Pbv-Let-7-P2b4
Pfl-Let-7
Pmi-Let-7
Sko-Let-7
Spt-Let-7-P2b4
Spu-Let-7
Tca-Let-7
Tgu-Let-7-P2b4
Tni-Let-7-P2b4a
Tni-Let-7-P2b4b
Xbo-Let-7
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884689.1: 4218661-4218736 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGCUGUGCUUGAGGUUGAGCCUAGCAAGGUGAGGUAGUAGGUUGUAUAGUUUGGGGGAUGGAGUAAAUCCUACCCAGGUGAUAACUAUACAGUCUAUUACCUUCCUUGAGAGGUACAAGGAAUACUUGGAAUGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUGCUGUGCUUGAGGUU--|A AG U GU UGGGGGAUGGAGUAA
G GCCU CAAGG GAGGUAGUAG UGUAUAGUU \
C UGGA GUUCC UUCCAUUAUC ACAUAUCAA A
AAGUAAGGUUCAUAAGGAA^A GA - UG UAGUGGACCCAUCCU
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the conservation of Let7-P2 processing. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Mal-Let-7-P2b4b_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Star sequence |
Mal-Let-7-P2b4b_3p* |
mirBase accession | None |
Sequence |
55- CUAUACAGUCUAUUACCUUCC -76
Get sequence
|