MirGeneDB ID | Gga-Let-7-P2b4 |
Family name |
LET-7 (all species) |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-let-7j
|
Paralogues |
Gga-Let-7-P1c
Gga-Let-7-P1d
Gga-Let-7-P2a1
Gga-Let-7-P2a2
Gga-Let-7-P2a4
Gga-Let-7-P2b1
Gga-Let-7-P2b2
Gga-Let-7-P2c1
Gga-Let-7-P2c2
Gga-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b4
Aga-Let-7
Agr-Let-7
Ami-Let-7-P2b4
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Cli-Let-7-P2b4
Cmi-Let-7-P2b4
Cpi-Let-7-P2b4
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dre-Let-7-P2b4a
Dre-Let-7-P2b4b
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Egr-Let-7
Esc-Let-7
Gja-Let-7-P2b4
Gmo-Let-7-P2b4a
Gmo-Let-7-P2b4b
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2b4
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P2b4
Mal-Let-7-P2b4a
Mal-Let-7-P2b4b
Mgi-Let-7
Mom-Let-7
Mun-Let-7-P2b4
Npo-Let-7
Oan-Let-7-P2b4
Obi-Let-7
Ofu-Let-7
Ovu-Let-7
Pau-Let-7
Pbv-Let-7-P2b4
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P2b4
Spu-Let-7
Sro-Let-7
Tca-Let-7
Tgu-Let-7-P2b4
Tni-Let-7-P2b4a
Tni-Let-7-P2b4b
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
26: 1650720-1650797 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Let-7-P2b4) |
Let-7-P2b4
26: 1650720-1650797 [-]
UCSC
Ensembl
Let-7-P2a4
26: 1650925-1650995 [-]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
ACACCAGACCUCUGUACUGCUCUGUGGAGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGAGGGAUUCUGUCCCAUUUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCUUAAAGAGCAGCAAUACCACCGGAGGAGAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACACCAGACCUCUGUAC---| GUG U GU UGGUGGGAGGGAUUCU
UGCUCU GAGG GAGGUAGUAG UGUAUAGUU \
ACGAGA UUCC UUCCGUUAUC ACAUAUCAA G
UAGAGGAGGCCACCAUAACG^ AA- - UG UAGUGGACUUUACCCU
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Mature sequence |
Gga-Let-7-P2b4_5p |
mirBase accession | MIMAT0001181 |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Proposed targets |
TargetScanVert: gga-let-7j-5p
miRDB: MIMAT0001181
|
Star sequence |
Gga-Let-7-P2b4_3p* |
mirBase accession | MIMAT0026542 |
Sequence |
57- CUAUACAGUCUAUUGCCUUCC -78
Get sequence
|
Proposed targets |
TargetScanVert: gga-let-7j-3p
miRDB: MIMAT0026542
|