MirGeneDB ID | Loc-Let-7-P2b4 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Let-7-P1b
Loc-Let-7-P1c
Loc-Let-7-P1d
Loc-Let-7-P2a1
Loc-Let-7-P2a2
Loc-Let-7-P2a3
Loc-Let-7-P2a4
Loc-Let-7-P2b1
Loc-Let-7-P2b2
Loc-Let-7-P2b3
Loc-Let-7-P2c1
Loc-Let-7-P2c2
Loc-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b4
Ami-Let-7-P2b4
Bge-Let-7
Bpl-Let-7
Cgi-Let-7
Cli-Let-7-P2b4
Cmi-Let-7-P2b4
Cpi-Let-7-P2b4
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dre-Let-7-P2b4a
Dre-Let-7-P2b4b
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Gga-Let-7-P2b4
Gja-Let-7-P2b4
Gmo-Let-7-P2b4a
Gmo-Let-7-P2b4b
Hme-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2b4
Lgi-Let-7
Mal-Let-7-P2b4a
Mal-Let-7-P2b4b
Mun-Let-7-P2b4
Npo-Let-7
Oan-Let-7-P2b4
Obi-Let-7
Ovu-Let-7
Pbv-Let-7-P2b4
Pfl-Let-7
Pmi-Let-7
Sko-Let-7
Spt-Let-7-P2b4
Spu-Let-7
Tca-Let-7
Tgu-Let-7-P2b4
Tni-Let-7-P2b4a
Tni-Let-7-P2b4b
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (LepOcu1) |
LG3: 23239112-23239188 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGAAGGAGGUAUUCCGUGUCUCUGCGAGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGAGGAAUUACAUCCUAUUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCUCGACGGUCAUGCAUGCAGCAAGAGAGAUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGAAGGAGGUAUUCCGUGUCU- -| U GU UGGUGGGAGGAAUUA
CUG CGAGG GAGGUAGUAG UGUAUAGUU C
GGC GCUCC UUCCGUUAUC ACAUAUCAA A
GUAGAGAGAACGACGUACGUACU A^ - UG UAGUGGACUUAUCCU
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Although templated, the presence of the 3' NTU is supported by the presence of 3' offset reads. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Loc-Let-7-P2b4_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Star sequence |
Loc-Let-7-P2b4_3p* |
mirBase accession | None |
Sequence |
56- CUAUACAGUCUAUUGCCUUCC -77
Get sequence
|