MirGeneDB 3.0
MirGeneDB ID

Loc-Let-7-P2b4

Family name LET-7 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Let-7-P1b  Loc-Let-7-P1c  Loc-Let-7-P1d  Loc-Let-7-P2a1  Loc-Let-7-P2a2  Loc-Let-7-P2a3  Loc-Let-7-P2a4  Loc-Let-7-P2b1  Loc-Let-7-P2b2  Loc-Let-7-P2b3  Loc-Let-7-P2c1  Loc-Let-7-P2c2  Loc-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b4  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2b4  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Cli-Let-7-P2b4  Cmi-Let-7-P2b4  Cpi-Let-7-P2b4  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Egr-Let-7  Esc-Let-7  Gga-Let-7-P2b4  Gja-Let-7-P2b4  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2b4  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Mal-Let-7-P2b4a  Mal-Let-7-P2b4b  Mgi-Let-7  Mom-Let-7  Mun-Let-7-P2b4  Npo-Let-7  Oan-Let-7-P2b4  Obi-Let-7  Ofu-Let-7  Ovu-Let-7  Pau-Let-7  Pbv-Let-7-P2b4  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2b4  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tgu-Let-7-P2b4  Tni-Let-7-P2b4a  Tni-Let-7-P2b4b  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG3: 23239112-23239188 [-] Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b4)		 Let-7-P2b4 LG3: 23239112-23239188 [-] Ensembl
Let-7-P2a4 LG3: 23239512-23239584 [-] Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
AAGAAGGAGGUAUUCCGUGUCUCUGCGAGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGAGGAAUUACAUCCUAUUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCUCGACGGUCAUGCAUGCAGCAAGAGAGAUG
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Structure
        10        20          30        40        50        60        
AAGAAGGAGGUAUUCCGUGUCU-   -|    U          GU         UGGUGGGAGGAAUUA 
                       CUG CGAGG GAGGUAGUAG  UGUAUAGUU               C
                       GGC GCUCC UUCCGUUAUC  ACAUAUCAA               A
GUAGAGAGAACGACGUACGUACU   A^    -          UG         UAGUGGACUUAUCCU 
     130       120       110        100        90        80        70
Deep sequencing
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CommentAlthough templated, the presence of the 3' NTU is supported by the presence of 3' offset reads.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Let-7-P2b4_5p
mirBase accessionNone
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Loc-Let-7-P2b4_3p*
mirBase accessionNone
Sequence 
56- CUAUACAGUCUAUUGCCUUCC -77
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