MirGeneDB 3.0
MirGeneDB ID

Loc-Let-7-P2a2

Family name LET-7 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Let-7-P1b  Loc-Let-7-P1c  Loc-Let-7-P1d  Loc-Let-7-P2a1  Loc-Let-7-P2a3  Loc-Let-7-P2a4  Loc-Let-7-P2b1  Loc-Let-7-P2b2  Loc-Let-7-P2b3  Loc-Let-7-P2b4  Loc-Let-7-P2c1  Loc-Let-7-P2c2  Loc-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a2  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2a2  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2a2  Cfa-Let-7-P2a2  Cja-Let-7-P2a2  Cli-Let-7-P2a2  Cmi-Let-7-P2a2  Cpi-Let-7-P2a2  Cpo-Let-7-P2a2  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a2  Dpu-Let-7  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2a2  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2a2  Gga-Let-7-P2a2  Gja-Let-7-P2a2  Gmo-Let-7-P2a2a  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2a2  Isc-Let-7  Laf-Let-7-P2a2  Lan-Let-7  Lch-Let-7-P2a2  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Mal-Let-7-P2a2a  Mal-Let-7-P2a2b  Mdo-Let-7-P2a2  Mgi-Let-7  Mml-Let-7-P2a2  Mmr-Let-7-P2a2  Mmu-Let-7-P2a2  Mom-Let-7  Mun-Let-7-P2a2  Neu-Let-7-P2a2  Npo-Let-7  Oan-Let-7-P2a2  Obi-Let-7  Ocu-Let-7-P2a2  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2a2  Pau-Let-7  Pbv-Let-7-P2a2  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2a2  Rph-Let-7  Sha-Let-7-P2a2  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2a2  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2a2  Tca-Let-7  Tgu-Let-7-P2a2  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2a2c  Xla-Let-7-P2a2d  Xtr-Let-7-P2a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG8: 48448542-48448613 [+] Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a2)		 Let-7-P2a2 LG8: 48448542-48448613 [+] Ensembl
Let-7-P2b2 LG8: 48448949-48449024 [+] Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
UGCUGAUCAGAAAAAGACUGUCCUUUGGGGUGAGGUAGUAGGUUGUAUAGUUUUGGGGUUACACCCUUCCUGUCAGAUAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCUGUAAUUUCAGCGCUGGAAGA
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Structure
        10          20         30        40        50        60     
UGCUGAUCAGAAAAAGACU--   -|  UG   U   GU                UUGGGGUUACAC 
                     GUC CUU  GGG GAG  AGUAGGUUGUAUAGUU            C
                     CGG GAA  CCU UUC  UCAUCUAACAUAUCAA            C
AGAAGGUCGCGACUUUAAUGU   U^  GU   -   UG                UAGACUGUCCUU 
130       120       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms and this second Dicer cut is likely monouridulated at the 3' end.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Let-7-P2a2_5p
mirBase accessionNone
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Loc-Let-7-P2a2_3p*
mirBase accessionNone
Sequence 
50- CUAUACAAUCUACUGUCUUUCC -72
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