MirGeneDB 2.1

MirGeneDB ID

Rno-Let-7-P2a2

Family name LET-7 (all species)
Seed GAGGUAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-let-7c-2
Paralogues Rno-Let-7-P1b  Rno-Let-7-P1c  Rno-Let-7-P1d  Rno-Let-7-P2a1  Rno-Let-7-P2a3  Rno-Let-7-P2b1  Rno-Let-7-P2b2  Rno-Let-7-P2b3  Rno-Let-7-P2c1  Rno-Let-7-P2c2  Rno-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a2  Ami-Let-7-P2a2  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a2  Cfa-Let-7-P2a2  Cgi-Let-7  Cli-Let-7-P2a2  Cmi-Let-7-P2a2  Cpi-Let-7-P2a2  Cpo-Let-7-P2a2  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a2  Dpu-Let-7  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a2  Gga-Let-7-P2a2  Gja-Let-7-P2a2  Gmo-Let-7-P2a2a  Hme-Let-7  Hsa-Let-7-P2a2  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a2  Lgi-Let-7  Loc-Let-7-P2a2  Mal-Let-7-P2a2a  Mal-Let-7-P2a2b  Mdo-Let-7-P2a2  Mml-Let-7-P2a2  Mmu-Let-7-P2a2  Mun-Let-7-P2a2  Npo-Let-7  Oan-Let-7-P2a2  Obi-Let-7  Ocu-Let-7-P2a2  Ovu-Let-7  Pbv-Let-7-P2a2  Pfl-Let-7  Pmi-Let-7  Sha-Let-7-P2a2  Sko-Let-7  Spt-Let-7-P2a2  Spu-Let-7  Sto-Let-7-P2a2  Tca-Let-7  Tgu-Let-7-P2a2  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Xbo-Let-7  Xla-Let-7-P2a2c  Xla-Let-7-P2a2d  Xtr-Let-7-P2a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr7: 126590225-126590293 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a2)
Let-7-P2a2 chr7: 126590225-126590293 [+] UCSC Ensembl
Let-7-P2b2 chr7: 126590633-126590707 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCGCCAAGACUGACUGACGGCCUUUGGGGUGAGGUAGUAGGUUGUAUGGUUUUGGGCUCUGCCCCGCUCUGCGGUAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCCGCAAUAUCUGCAGUGGAUA
Get precursor sequence
Structure
        10        20         30        40        50        60    
UCCGCCAAGACUGACUGA     -|  G   U   GU                UUGGGCUCUGC 
                  CGGCC UUU GGG GAG  AGUAGGUUGUAUGGUU           C
                  GCCGG GAA UCC UUC  UCAUCUAACAUAUCAA           C
AUAGGUGACGUCUAUAAC     U^  G   U   UG                UGGCGUCUCGC 
       120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
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Mature sequence

Rno-Let-7-P2a2_5p

mirBase accessionMIMAT0000776
Sequence
0- UGAGGUAGUAGGUUGUAUGGUU -22
Get sequence
Proposed targets microrna.org: MIMAT0000776
TargetScanVert: rno-let-7c-5p
miRDB: MIMAT0000776
Star sequence

Rno-Let-7-P2a2_3p*

mirBase accessionMIMAT0017088
Sequence
48- CUAUACAAUCUACUGUCUUUC -69
Get sequence
Proposed targets TargetScanVert: rno-let-7c-2-3p
miRDB: MIMAT0017088