MirGeneDB 2.1

MirGeneDB ID

Rno-Let-7-P2a1

Family name LET-7 (all species)
Seed GAGGUAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-let-7a-1
Paralogues Rno-Let-7-P1b  Rno-Let-7-P1c  Rno-Let-7-P1d  Rno-Let-7-P2a2  Rno-Let-7-P2a3  Rno-Let-7-P2b1  Rno-Let-7-P2b2  Rno-Let-7-P2b3  Rno-Let-7-P2c1  Rno-Let-7-P2c2  Rno-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a1  Ami-Let-7-P2a1  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a1  Cfa-Let-7-P2a1  Cgi-Let-7  Cli-Let-7-P2a1  Cmi-Let-7-P2a1  Cpi-Let-7-P2a1  Cpo-Let-7-P2a1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a1  Dpu-Let-7  Dre-Let-7-P2a1a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a1  Gga-Let-7-P2a1  Gja-Let-7-P2a1  Gmo-Let-7-P2a1a  Hme-Let-7  Hsa-Let-7-P2a1  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a1  Lgi-Let-7  Loc-Let-7-P2a1  Mal-Let-7-P2a1a  Mdo-Let-7-P2a1  Mml-Let-7-P2a1  Mmu-Let-7-P2a1  Mun-Let-7-P2a1  Npo-Let-7  Oan-Let-7-P2a1  Obi-Let-7  Ocu-Let-7-P2a1  Ovu-Let-7  Pbv-Let-7-P2a1  Pfl-Let-7  Pmi-Let-7  Sha-Let-7-P2a1  Sko-Let-7  Spt-Let-7-P2a1  Spu-Let-7  Sto-Let-7-P2a1  Tca-Let-7  Tgu-Let-7-P2a1  Xbo-Let-7  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xtr-Let-7-P2a1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr17: 16417865-16417936 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a1)
Let-7-P2a1 chr17: 16417865-16417936 [+] UCSC Ensembl
Let-7-P2b1 chr17: 16418228-16418304 [+] UCSC Ensembl
Let-7-P2c1 chr17: 16419993-16420067 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGCCCUGGAUGUUGUCUUCACUGUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAAGGUGAUGGAAAAGUCUGCAUUCGUGG
Get precursor sequence
Structure
        10          20        30        40        50        60      
UUUGCCCUGGAUGUUGU--|U     G     U   GU                UUAGGGUCACACC 
                   C UCACU UGGGA GAG  AGUAGGUUGUAUAGUU             \
                   G AGUGG AUCCU UUC  UCAUCUAACAUAUCAA             C
GGUGCUUACGUCUGAAAAG^U     A     -   UG                UAGAGGGUCACCA 
130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
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Mature sequence

Rno-Let-7-P2a1_5p

mirBase accessionMIMAT0000774
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Proposed targets microrna.org: MIMAT0000774
TargetScanVert: rno-let-7a-5p
miRDB: MIMAT0000774
Star sequence

Rno-Let-7-P2a1_3p*

mirBase accessionMIMAT0017085
Sequence
51- CUAUACAAUCUACUGUCUUUC -72
Get sequence
Proposed targets TargetScanVert: rno-let-7a-1-3p
miRDB: MIMAT0017085