MirGeneDB 3.0
MirGeneDB ID

Gmo-Let-7-P2a1a

Family name LET-7 (all species)
Species Cod (Gadus morhua)
MiRBase ID
Paralogues Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Gmo-Let-7-P1c2  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Gmo-Let-7-P2a2a  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gmo-Let-7-P2b1a  Gmo-Let-7-P2b2a  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b  Gmo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a1  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2a1  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2a1  Cfa-Let-7-P2a1  Cja-Let-7-P2a1  Cli-Let-7-P2a1  Cmi-Let-7-P2a1  Cpi-Let-7-P2a1  Cpo-Let-7-P2a1  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a1  Dpu-Let-7  Dre-Let-7-P2a1a  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2a1  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2a1  Gga-Let-7-P2a1  Gja-Let-7-P2a1  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2a1  Isc-Let-7  Laf-Let-7-P2a1  Lan-Let-7  Lch-Let-7-P2a1  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2a1  Mal-Let-7-P2a1a  Mdo-Let-7-P2a1  Mgi-Let-7  Mml-Let-7-P2a1  Mmr-Let-7-P2a1  Mmu-Let-7-P2a1  Mom-Let-7  Mun-Let-7-P2a1  Npo-Let-7  Oan-Let-7-P2a1  Obi-Let-7  Ocu-Let-7-P2a1  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2a1  Pau-Let-7  Pbv-Let-7-P2a1  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2a1  Rph-Let-7  Sha-Let-7-P2a1  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2a1  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2a1  Tca-Let-7  Tgu-Let-7-P2a1  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xtr-Let-7-P2a1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1801: 26965-27035 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a1a)		 Let-7-P2b1a GeneScaffold_1801: 26456-26532 [-] UCSC Ensembl
Let-7-P2a1a GeneScaffold_1801: 26965-27035 [-] UCSC Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
UGUGACGGCCGCUCUGUUCAGCCUCUGGGAUGAGGUAGUUGGUUGUAUAGUUUUAGGGUCACACCCACACUGGGAGAUGACUAUUCAACCUACUGUCUUUCCCAAAGUCCCAGUGACACUUCGCCCUCCGC
Get precursor sequence
Structure
        10        20        30               40        50        60     
UGUGACGGCCGCUCUGUUCAGCCU       -------|  GU   U     U      UUAGGGUCACAC 
                        CUGGGAU       GAG  AGU GGUUG AUAGUU            C
                        GACCCUG       UUC  UCA CCAAC UAUCAG            C
CGCCUCCCGCUUCACAGU------       AAACCCU^  UG   U     U      UAGAGGGUCACA 
 .       120             110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Let-7-P2a1a_5p
mirBase accessionNone
Sequence 
0- UGAGGUAGUUGGUUGUAUAGUU -22
Get sequence
Star sequence

Gmo-Let-7-P2a1a_3p*
mirBase accessionNone
Sequence 
50- CUAUUCAACCUACUGUCUUUC -71
Get sequence