MirGeneDB 2.1

MirGeneDB ID

Cmi-Let-7-P2a1

Family name LET-7 (all species)
Seed GAGGUAG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Let-7-P1d  Cmi-Let-7-P2a2  Cmi-Let-7-P2a4  Cmi-Let-7-P2b2  Cmi-Let-7-P2b4  Cmi-Let-7-P2c1  Cmi-Let-7-P2c2  Cmi-Let-7-P2c3  Cmi-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2a1  Ami-Let-7-P2a1  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a1  Cfa-Let-7-P2a1  Cgi-Let-7  Cli-Let-7-P2a1  Cpi-Let-7-P2a1  Cpo-Let-7-P2a1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a1  Dpu-Let-7  Dre-Let-7-P2a1a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a1  Gga-Let-7-P2a1  Gja-Let-7-P2a1  Gmo-Let-7-P2a1a  Hme-Let-7  Hsa-Let-7-P2a1  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a1  Lgi-Let-7  Loc-Let-7-P2a1  Mal-Let-7-P2a1a  Mdo-Let-7-P2a1  Mml-Let-7-P2a1  Mmu-Let-7-P2a1  Mun-Let-7-P2a1  Npo-Let-7  Oan-Let-7-P2a1  Obi-Let-7  Ocu-Let-7-P2a1  Ovu-Let-7  Pbv-Let-7-P2a1  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a1  Sha-Let-7-P2a1  Sko-Let-7  Spt-Let-7-P2a1  Spu-Let-7  Sto-Let-7-P2a1  Tca-Let-7  Tgu-Let-7-P2a1  Xbo-Let-7  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xtr-Let-7-P2a1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635961.1: 560380-560450 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGCCAAAGAUCCAGUUUGCACUUUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACACUGGGAGAUAACUAUACAAUCUACUGUCUUUCUUAAGGCUGCACAGUCAUCUUCAACCACUU
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Structure
        10         20         30        40        50        60     
CUUGCCAAAGAUCCAGUU-    -|       U   GU                UUAGGGUCACAC 
                   UGCA CUUUGGGA GAG  AGUAGGUUGUAUAGUU            C
                   ACGU GGAAUUCU UUC  UCAUCUAACAUAUCAA            C
UUCACCAACUUCUACUGAC    C^       -   UG                UAGAGGGUCACA 
 .       120       110       100         90        80        70
Deep sequencing
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CommentBased on structural and phylogenetic considerations it is assumed that the templated 3' U is a post-transcriptional addition.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Let-7-P2a1_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Cmi-Let-7-P2a1_3p*

mirBase accessionNone
Sequence
50- CUAUACAAUCUACUGUCUUUC -71
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