MirGeneDB 3.0
MirGeneDB ID

Cmi-Let-7-P2a4

Family name LET-7 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Let-7-P1d  Cmi-Let-7-P2a1  Cmi-Let-7-P2a2  Cmi-Let-7-P2b2  Cmi-Let-7-P2b4  Cmi-Let-7-P2c1  Cmi-Let-7-P2c2  Cmi-Let-7-P2c3  Cmi-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2a4  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2a4  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Cli-Let-7-P2a4  Cpi-Let-7-P2a4  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P2a4a  Dre-Let-7-P2a4b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Egr-Let-7  Esc-Let-7  Gga-Let-7-P2a4  Gja-Let-7-P2a4  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a4  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2a4  Mal-Let-7-P2a4a  Mal-Let-7-P2a4b  Mgi-Let-7  Mom-Let-7  Mun-Let-7-P2a4  Npo-Let-7  Oan-Let-7-P2a4  Obi-Let-7  Ofu-Let-7  Ovu-Let-7  Pau-Let-7  Pbv-Let-7-P2a4  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2a4  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tgu-Let-7-P2a4  Tni-Let-7-P2a4a  Tni-Let-7-P2a4b  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636238.1: 143839-143909 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a4)		 Let-7-P2b4 KI636238.1: 142747-142824 [-] UCSC Ensembl
Let-7-P2a4 KI636238.1: 143839-143909 [-] UCSC Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
UGAAGCUGGUGUCCCAGCUGUCCUUAGGGCUGAGGUAGUAGAUUGUAUAGUUGUGAGGUUGUACACCUCCUCUGAGAUAACUAUGCAAUCUACUGUCUUUCCUGAAGAGACAGAAAGAACUGGGGACGGGA
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Structure
        10         20         30        40        50        60     
UGAAGCUGGUGUCCCAG-     -|  A   CU   GU                GUGAGGUUGUAC 
                  CUGUC CUU GGG  GAG  AGUAGAUUGUAUAGUU            A
                  GACAG GAA UCC  UUC  UCAUCUAACGUAUCAA            C
AGGGCAGGGGUCAAGAAA     A^  G   U-   UG                UAGAGUCUCCUC 
 .       120       110       100         90        80        70
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Let-7-P2a4_5p
mirBase accessionNone
Sequence 
0- UGAGGUAGUAGAUUGUAUAGUU -22
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Star sequence

Cmi-Let-7-P2a4_3p*
mirBase accessionNone
Sequence 
50- CUAUGCAAUCUACUGUCUUUC -71
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