Let-7-P2a4b

MirGeneDB ID

Dre-Let-7-P2a4b

Family name

Species

MiRBase ID

Paralogues

Dre-Let-7-P1b1 Dre-Let-7-P1b2 Dre-Let-7-P1c1 Dre-Let-7-P1c2 Dre-Let-7-P1d1 Dre-Let-7-P1d2 Dre-Let-7-P2a1a Dre-Let-7-P2a2a Dre-Let-7-P2a2b Dre-Let-7-P2a3a Dre-Let-7-P2a3b Dre-Let-7-P2a4a Dre-Let-7-P2b1a Dre-Let-7-P2b2a Dre-Let-7-P2b2b Dre-Let-7-P2b3a Dre-Let-7-P2b4a Dre-Let-7-P2b4b Dre-Let-7-P2c2b Dre-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a4 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a4 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Cli-Let-7-P2a4 Cmi-Let-7-P2a4 Cpi-Let-7-P2a4 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Gga-Let-7-P2a4 Gja-Let-7-P2a4 Gmo-Let-7-P2a4a Gmo-Let-7-P2a4b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Isc-Let-7 Lan-Let-7 Lch-Let-7-P2a4 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a4 Mal-Let-7-P2a4a Mal-Let-7-P2a4b Mgi-Let-7 Mom-Let-7 Mun-Let-7-P2a4 Npo-Let-7 Oan-Let-7-P2a4 Obi-Let-7 Ofu-Let-7 Ovu-Let-7 Pau-Let-7 Pbv-Let-7-P2a4 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a4 Spu-Let-7 Sro-Let-7 Tca-Let-7 Tgu-Let-7-P2a4 Tni-Let-7-P2a4a Tni-Let-7-P2a4b Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr6: 54507105-54507176 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a4b)

Let-7-P2b4b chr6: 54506483-54506558 [-] UCSC Ensembl
Let-7-P2a4b chr6: 54507105-54507176 [-] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

CCUUGUCAAGUUUGUUUCUGUCCCCUAAGCUGAGGUAGUAGAUUGAAUAGUUGUGGAGUAUAAAACCUCCCUUUGAGAUAACUAUACAAUCUACUGUCUUUCUUUAGGGAUGCAGAUUAACCAGCUGAAGAC

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Structure

        10        20         30        40        50        60      
CCUUGUCAAGUUUGUUUC   C-|      CU   GU         A      GUGGAGUAUAAAA 
                  UGU  CCCUAAG  GAG  AGUAGAUUG AUAGUU             \
                  ACG  GGGAUUU  UUC  UCAUCUAAC UAUCAA             C
CAGAAGUCGACCAAUUAG   UA^      CU   UG         A      UAGAGUUUCCCUC 
130       120       110       100        90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Let-7-P2a4b_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGAUUGAAUAGUU -22

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Star sequence

Dre-Let-7-P2a4b_3p*

mirBase accession

None

Sequence

51- CUAUACAAUCUACUGUCUUUC -72

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