MirGeneDB 2.1
MirGeneDB ID

Dre-Let-7-P1d2

Family name LET-7 (all species)
Seed GAGGUAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-let-7a-4
Paralogues Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dre-Let-7-P1c1  Dre-Let-7-P1c2  Dre-Let-7-P1d1  Dre-Let-7-P2a1a  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dre-Let-7-P2a4a  Dre-Let-7-P2a4b  Dre-Let-7-P2b1a  Dre-Let-7-P2b2a  Dre-Let-7-P2b2b  Dre-Let-7-P2b3a  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dre-Let-7-P2c2b  Dre-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1d  Ami-Let-7-P1d  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1d  Cfa-Let-7-P1d  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1d  Cmi-Let-7-P1d  Cpi-Let-7-P1d  Cpo-Let-7-P1d  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1d  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1d  Gga-Let-7-P1d  Gja-Let-7-P1d  Gmo-Let-7-P1d2  Hme-Let-7  Hsa-Let-7-P1d  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1d  Lgi-Let-7  Loc-Let-7-P1d  Mal-Let-7-P1d2  Mdo-Let-7-P1d  Mml-Let-7-P1d  Mmu-Let-7-P1d  Mun-Let-7-P1d  Npo-Let-7  Oan-Let-7-P1d  Obi-Let-7  Ocu-Let-7-P1d  Ovu-Let-7  Pbv-Let-7-P1d  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1d  Sha-Let-7-P1d  Sko-Let-7  Spt-Let-7-P1d  Spu-Let-7  Sto-Let-7-P1d  Tca-Let-7  Tgu-Let-7-P1d  Tni-Let-7-P1d2  Xbo-Let-7 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr5: 29990466-29990532 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1d2)		 Mir-10-P2d2 chr5: 29990157-29990213 [+] UCSC Ensembl
Let-7-P1d2 chr5: 29990466-29990532 [+] UCSC Ensembl
Mir-10-P3d2 chr5: 29998775-29998836 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCUAAAGUAUUAGAGCGAUGUCUCGGGAUGAGGUAGUAGGUUGUAUAGUUUAGAGUUACAACACGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUCGAGCAGACGCCCUCCUCUGUAAAAGCUG
Get precursor sequence
Structure
        10          20         30        40        50        60   
UCCCUAAAGUAUUAGAG--  A-| U      AU   G   U             UAGAGUUACA 
                   CG  UG CUCGGG  GAG UAG AGGUUGUAUAGUU          \
                   GC  AC GAGCUC  UUC AUC UCCGACAUGUCAA          A
GUCGAAAAUGUCUCCUCCC  AG^ -      CU   G   C             UAGAGGGCAC 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Let-7-P1d2_5p
mirBase accessionMIMAT0001759
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Proposed targets TargetScanFish: dre-let-7a
Star sequence

Dre-Let-7-P1d2_3p*
mirBase accessionNone
Sequence 
45- CUGUACAGCCUCCUAGCUUUCC -67
Get sequence