MirGeneDB 2.1
MirGeneDB ID

Dre-Let-7-P1c1

Family name LET-7 (all species)
Seed GAGGUAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-let-7c-1
Paralogues Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dre-Let-7-P1c2  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dre-Let-7-P2a1a  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dre-Let-7-P2a4a  Dre-Let-7-P2a4b  Dre-Let-7-P2b1a  Dre-Let-7-P2b2a  Dre-Let-7-P2b2b  Dre-Let-7-P2b3a  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dre-Let-7-P2c2b  Dre-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1c  Ami-Let-7-P1c  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1c  Cfa-Let-7-P1c  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1c  Cpi-Let-7-P1c  Cpo-Let-7-P1c  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1c  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1c  Gga-Let-7-P1c  Gja-Let-7-P1c  Hme-Let-7  Hsa-Let-7-P1c  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1c  Lgi-Let-7  Loc-Let-7-P1c  Mml-Let-7-P1c  Mmu-Let-7-P1c  Mun-Let-7-P1c  Npo-Let-7  Oan-Let-7-P1c  Obi-Let-7  Ocu-Let-7-P1c  Ovu-Let-7  Pbv-Let-7-P1c  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1c  Sha-Let-7-P1c  Sko-Let-7  Spt-Let-7-P1c  Spu-Let-7  Sto-Let-7-P1c  Tca-Let-7  Tgu-Let-7-P1c  Xbo-Let-7  Xtr-Let-7-P1c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr15: 29795845-29795911 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1c1)		 Mir-10-P2c1 chr15: 29795596-29795654 [+] UCSC Ensembl
Let-7-P1c1 chr15: 29795845-29795911 [+] UCSC Ensembl
Mir-10-P3c1 chr15: 29800981-29801041 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAGCAACUGAGAGUGUGUGCAUCCAGGCUGAGGUAGUAGGUUGUAUGGUUUAGAAUUUUGCCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGCUCACAAGCCAGCAGUCAGCAUAC
Get precursor sequence
Structure
        10         20         30        40        50        60   
UACAGCAACUGAGAGUG-    CA-|     CU   G   U             UAGAAUUUUG 
                  UGUG   UCCAGG  GAG UAG AGGUUGUAUGGUU          \
                  ACAC   AGGUUC  UUC AUC UCCAACAUGUCAA          C
CAUACGACUGACGACCGA    UCG^     CU   G   U             UUGAGGGUCC 
     120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Let-7-P1c1_5p
mirBase accessionMIMAT0001761
Sequence 
0- UGAGGUAGUAGGUUGUAUGGUU -22
Get sequence
Proposed targets TargetScanFish: dre-let-7c
Star sequence

Dre-Let-7-P1c1_3p*
mirBase accessionMIMAT0031930
Sequence 
45- CUGUACAACCUUCUAGCUUUCC -67
Get sequence