MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-10-P3c1

Family name MIR-10 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-125c
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3c  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3c  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3c  Cfa-Mir-10-P3c  Cin-Mir-10-P3  Cja-Mir-10-P3c  Cli-Mir-10-P3c  Cpi-Mir-10-P3c  Cpo-Mir-10-P3c  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Eca-Mir-10-P3c  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3c  Gga-Mir-10-P3c  Gja-Mir-10-P3c  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3c  Isc-Mir-10-P3  Laf-Mir-10-P3c  Lan-Mir-10-P3  Lch-Mir-10-P3c  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3c  Mdo-Mir-10-P3c  Mgi-Mir-10-P3  Mml-Mir-10-P3c  Mmr-Mir-10-P3c  Mmu-Mir-10-P3c  Mom-Mir-10-P3  Mun-Mir-10-P3c  Nag-Mir-10-P3-v1  Neu-Mir-10-P3c  Nve-Mir-10  Oan-Mir-10-P3c  Obi-Mir-10-P3  Ocu-Mir-10-P3c  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3c  Pau-Mir-10-P3  Pbv-Mir-10-P3c  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3c  Rph-Mir-10-P3  Sha-Mir-10-P3c  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3c  Spu-Mir-10-P3  Sto-Mir-10-P3c  Tca-Mir-10-P3  Tgu-Mir-10-P3c  War-Mir-10-P3  Xbo-Mir-10-P3  Xtr-Mir-10-P3c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)		 chr15: 29800981-29801041 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3c1)		 Mir-10-P2c1 chr15: 29795596-29795654 [+] UCSC Ensembl
Let-7-P1c1 chr15: 29795845-29795911 [+] UCSC Ensembl
Mir-10-P3c1 chr15: 29800981-29801041 [+] UCSC Ensembl
Seed CCCUGAG
Precursor
(pre-Mir +30nt flank)		 
CUCAGUUGGUUAUGGCUGCUCUCCUCCUGUUCCCUGAGACCCUAACUCGUGAGGUCUUUUUCCAAAAUCACGGGUCAGGAGCUUGGGAGACAGGUGGAGGGCUUCAGCAGCUUUGAUCAAA
Get precursor sequence
Structure
        10          20        30        40        50          
CUCAGUUGGUUAUGGCU--|      U     UC  UG  AC   A        GGUCUUU 
                   GCUCUCC CCUGU  CC  AG  CCU ACUCGUGA       \
                   CGGGAGG GGACA  GG  UC  GGA UGGGCACU       U
AAACUAGUUUCGACGACUU^      U     GA  GU  GA   C        AAAACCU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P3c1_5p
mirBase accessionMIMAT0001822
Sequence 
0- UCCCUGAGACCCUAACUCGUGA -22
Get sequence
Proposed targets TargetScanFish: dre-miR-125c
Star sequence

Dre-Mir-10-P3c1_3p*
mirBase accessionMIMAT0031966
Sequence 
39- ACGGGUCAGGAGCUUGGGAGAC -61
Get sequence