MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-10-P3

Family name MIR-10 (all species)
Seed CCCUGAG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-125
Paralogues Cte-Mir-10-P1  Cte-Mir-10-P2  Cte-Mir-10-P4  Cte-Mir-10-P5  Cte-Mir-10-P6  Cte-Mir-10-P7 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Aca-Mir-10-P3c  Aca-Mir-10-P3d  Ami-Mir-10-P3b  Ami-Mir-10-P3c  Ami-Mir-10-P3d  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Bta-Mir-10-P3c  Bta-Mir-10-P3d  Cbr-Mir-10-P3m  Cbr-Mir-10-P3n  Cel-Mir-10-P3m  Cel-Mir-10-P3n  Cfa-Mir-10-P3b  Cfa-Mir-10-P3c  Cfa-Mir-10-P3d  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3c  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3b  Cpi-Mir-10-P3c  Cpi-Mir-10-P3d  Cpo-Mir-10-P3b  Cpo-Mir-10-P3c  Cpo-Mir-10-P3d  Csc-Mir-10-P3r1  Csc-Mir-10-P3r2  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Ebu-Mir-10-P3e  Ebu-Mir-10-P3f  Efe-Mir-10-P3g  Efe-Mir-10-P3h  Efe-Mir-10-P3i  Esc-Mir-10-P3  Ete-Mir-10-P3b  Ete-Mir-10-P3c  Ete-Mir-10-P3d  Gga-Mir-10-P3c  Gga-Mir-10-P3d  Gja-Mir-10-P3b  Gja-Mir-10-P3c  Gja-Mir-10-P3d  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Gmo-Mir-10-P3c2  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2  Hsa-Mir-10-P3b  Hsa-Mir-10-P3c  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lch-Mir-10-P3c  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Loc-Mir-10-P3c  Loc-Mir-10-P3d  Lpo-Mir-10-P3o  Lpo-Mir-10-P3p  Lpo-Mir-10-P3q  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mal-Mir-10-P3c2  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2  Mdo-Mir-10-P3c  Mdo-Mir-10-P3d  Mml-Mir-10-P3b  Mml-Mir-10-P3c  Mml-Mir-10-P3d  Mmu-Mir-10-P3b  Mmu-Mir-10-P3c  Mmu-Mir-10-P3d  Mun-Mir-10-P3b  Mun-Mir-10-P3c  Mun-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3b  Oan-Mir-10-P3c  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ocu-Mir-10-P3c  Ocu-Mir-10-P3d  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pbv-Mir-10-P3c  Pbv-Mir-10-P3d  Pfl-Mir-10-P3j1  Pfl-Mir-10-P3j2  Pfl-Mir-10-P3k  Pfl-Mir-10-P3l  Pma-Mir-10-P3o1  Pma-Mir-10-P3o2  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Rno-Mir-10-P3c  Rno-Mir-10-P3d  Sha-Mir-10-P3b  Sha-Mir-10-P3c  Sha-Mir-10-P3d  Sko-Mir-10-P3  Sme-Mir-10-P3s  Sme-Mir-10-P3t  Sme-Mir-10-P3u  Spt-Mir-10-P3b  Spt-Mir-10-P3c  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3b  Sto-Mir-10-P3c  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3c  Tgu-Mir-10-P3d  Tni-Mir-10-P3b2  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4  Xtr-Mir-10-P3b  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Node of Origin (locus) Bilateria
Node of Origin (family) Eumetazoa
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_135: 290568-290628 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3)
Mir-10-P2 CAPTEscaffold_135: 267093-267153 [+] Ensembl
Let-7 CAPTEscaffold_135: 267314-267381 [+] Ensembl
Mir-10-P3 CAPTEscaffold_135: 290568-290628 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGACCACUAACCACUCGGCAUCUCGCACUCCCUGAGACCCUAACUUGUGAAGCUUUCUAAAAAGAUCGCGAGUUAGAAUCUUGGGCUCUGCGAGGAGCUCGAUUGCCGUCGAAUGAAGA
Get precursor sequence
Structure
        10          20        30        40        50          
GCUGACCACUAACCACU-  -| AU      CUC  UG   CC           AGCUUUC 
                  CG GC  CUCGCA   CC  AGA  CUAACUUGUGA       \
                  GC CG  GAGCGU   GG  UCU  GAUUGAGCGCU       U
AGAAGUAAGCUGCCGUUA  U^ AG      CUC  GU   AA           AGAAAAA 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cte-Mir-10-P3_5p

mirBase accessionMIMAT0009525
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Star sequence

Cte-Mir-10-P3_3p*

mirBase accessionNone
Sequence
39- GCGAGUUAGAAUCUUGGGCUCU -61
Get sequence