MirGeneDB ID | Sme-Mir-10-P3s |
Family name |
MIR-10 (all species) |
Seed |
CCCUGAG |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-125a
|
Paralogues |
Sme-Mir-10-P1s
Sme-Mir-10-P1t
Sme-Mir-10-P3t
Sme-Mir-10-P3u
|
Orthologues |
Aae-Mir-10-P3
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Cgi-Mir-10-P3
Cin-Mir-10-P3
Cte-Mir-10-P3
Dan-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dpu-Mir-10-P3
Dsi-Mir-10-P3
Dya-Mir-10-P3
Esc-Mir-10-P3
Isc-Mir-10-P3
Lan-Mir-10-P3
Lgi-Mir-10-P3
Nve-Mir-10
Obi-Mir-10-P3
Ovu-Mir-10-P3
Pmi-Mir-10-P3
Sko-Mir-10-P3
Spu-Mir-10-P3
Tca-Mir-10-P3
Xbo-Mir-10-P3
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000015_dd_Smes_g4_15: 6805749-6805809 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGAUUUCGAUGCUGUUGUCUGUAUUUAUAUCCCUGAGACCAUUGACUGCAUUUGUUUGAGGUUUCAAUGUAGUUUUUGGUAUCAGGAUUGUGGAUAUGGAGCAUUCUUCCCGGUUUCAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGAUUUCGAUGCUGUUG--| UC G UU UUGUUUG
UCUGUAUUUAUA CCUGA ACCA GACUGCAU \
AGGUAUAGGUGU GGACU UGGU UUGAUGUA A
UUACUUUGGCCCUUCUUACG^ UA A UU ACUUUGG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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Mature sequence |
Sme-Mir-10-P3s_5p |
mirBase accession | MIMAT0003996 |
Sequence |
0- UCCCUGAGACCAUUGACUGCAU -22
Get sequence
|
Star sequence |
Sme-Mir-10-P3s_3p* |
mirBase accession | MIMAT0003997 |
Sequence |
39- GUAGUUUUUGGUAUCAGGAUUG -61
Get sequence
|