MirGeneDB 2.1

MirGeneDB ID

Xbo-Mir-10-P3

Family name

MIR-10 (all species)

Seed

Species

Xenoturbella (Xenoturbella bocki)

MiRBase ID

Paralogues

Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Aca-Mir-10-P3c Aca-Mir-10-P3d Ami-Mir-10-P3b Ami-Mir-10-P3c Ami-Mir-10-P3d Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Bta-Mir-10-P3c Bta-Mir-10-P3d Cbr-Mir-10-P3m Cbr-Mir-10-P3n Cel-Mir-10-P3m Cel-Mir-10-P3n Cfa-Mir-10-P3b Cfa-Mir-10-P3c Cfa-Mir-10-P3d Cgi-Mir-10-P3 Cin-Mir-10-P3 Cli-Mir-10-P3c Cli-Mir-10-P3d Cmi-Mir-10-P3d Cpi-Mir-10-P3b Cpi-Mir-10-P3c Cpi-Mir-10-P3d Cpo-Mir-10-P3b Cpo-Mir-10-P3c Cpo-Mir-10-P3d Csc-Mir-10-P3r1 Csc-Mir-10-P3r2 Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3c Dno-Mir-10-P3d Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Ebu-Mir-10-P3e Ebu-Mir-10-P3f Efe-Mir-10-P3g Efe-Mir-10-P3h Efe-Mir-10-P3i Esc-Mir-10-P3 Ete-Mir-10-P3b Ete-Mir-10-P3c Ete-Mir-10-P3d Gga-Mir-10-P3c Gga-Mir-10-P3d Gja-Mir-10-P3b Gja-Mir-10-P3c Gja-Mir-10-P3d Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gmo-Mir-10-P3c2 Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2 Hsa-Mir-10-P3b Hsa-Mir-10-P3c Hsa-Mir-10-P3d Isc-Mir-10-P3 Lan-Mir-10-P3 Lch-Mir-10-P3b Lch-Mir-10-P3c Lch-Mir-10-P3d Lgi-Mir-10-P3 Loc-Mir-10-P3b Loc-Mir-10-P3c Loc-Mir-10-P3d Lpo-Mir-10-P3o Lpo-Mir-10-P3p Lpo-Mir-10-P3q Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mal-Mir-10-P3c2 Mal-Mir-10-P3d1 Mal-Mir-10-P3d2 Mdo-Mir-10-P3c Mdo-Mir-10-P3d Mml-Mir-10-P3b Mml-Mir-10-P3c Mml-Mir-10-P3d Mmu-Mir-10-P3b Mmu-Mir-10-P3c Mmu-Mir-10-P3d Mun-Mir-10-P3b Mun-Mir-10-P3c Mun-Mir-10-P3d Nve-Mir-10 Oan-Mir-10-P3b Oan-Mir-10-P3c Oan-Mir-10-P3d Obi-Mir-10-P3 Ocu-Mir-10-P3b Ocu-Mir-10-P3c Ocu-Mir-10-P3d Ovu-Mir-10-P3 Pbv-Mir-10-P3b Pbv-Mir-10-P3c Pbv-Mir-10-P3d Pfl-Mir-10-P3j1 Pfl-Mir-10-P3j2 Pfl-Mir-10-P3k Pfl-Mir-10-P3l Pma-Mir-10-P3o1 Pma-Mir-10-P3o2 Pmi-Mir-10-P3 Rno-Mir-10-P3b Rno-Mir-10-P3c Rno-Mir-10-P3d Sha-Mir-10-P3b Sha-Mir-10-P3c Sha-Mir-10-P3d Sko-Mir-10-P3 Sme-Mir-10-P3s Sme-Mir-10-P3t Sme-Mir-10-P3u Spt-Mir-10-P3b Spt-Mir-10-P3c Spt-Mir-10-P3d Spu-Mir-10-P3 Sto-Mir-10-P3b Sto-Mir-10-P3c Sto-Mir-10-P3d Tca-Mir-10-P3 Tgu-Mir-10-P3c Tgu-Mir-10-P3d Tni-Mir-10-P3b2 Tni-Mir-10-P3d1 Tni-Mir-10-P3d2 Xla-Mir-10-P3b Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4 Xtr-Mir-10-P3b Xtr-Mir-10-P3c Xtr-Mir-10-P3d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(Xbocki_plus)

3C-assembly_contig_1897: 2807512-2807570 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCAGAGACUCCUUGGUGCCUUGGGGUCAGUCCCUGAGACCCUAACUUGUGAUCGGCUCAGGUUUCACAGGGUUAGAGCUUCAGGUACCGACACCAACGGCCAGACAACGUUGGACAAA

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Structure

        10         20         30        40         50        
CGCAGAGACUCCUUGGU-   -    G   A  C      ACC    -|      UCGGC 
                  GCC UUGG GUC GU CCUGAG   CUAA CUUGUGA     U
                  CGG AACC CAG CA GGACUU   GAUU GGACACU     C
AAACAGGUUGCAACAGAC   C    A   C  U      CGA    G^      UUGGA 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

No

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

-

+

To	To	To

Star sequence

Xbo-Mir-10-P3_5p*

mirBase accession

None

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Mature sequence

Xbo-Mir-10-P3_3p

mirBase accession

None

Sequence

36- ACAGGGUUAGAGCUUCAGGUACC -59

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