MirGeneDB ID | Efe-Mir-10-P3i |
Family name |
MIR-10 (all species) |
Seed |
CCCUGAG |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-10-P1i
Efe-Mir-10-P1j
Efe-Mir-10-P2g
Efe-Mir-10-P2h
Efe-Mir-10-P2i
Efe-Mir-10-P2j
Efe-Mir-10-P2k
Efe-Mir-10-P3g
Efe-Mir-10-P3h
Efe-Mir-10-P4a
Efe-Mir-10-P4b
Efe-Mir-10-P4c
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Efe-Mir-10-P6
Efe-Mir-10-P7
|
Orthologues |
Aae-Mir-10-P3
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Cgi-Mir-10-P3
Cin-Mir-10-P3
Cte-Mir-10-P3
Dan-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dpu-Mir-10-P3
Dsi-Mir-10-P3
Dya-Mir-10-P3
Esc-Mir-10-P3
Isc-Mir-10-P3
Lan-Mir-10-P3
Lgi-Mir-10-P3
Nve-Mir-10
Obi-Mir-10-P3
Ovu-Mir-10-P3
Pmi-Mir-10-P3
Sko-Mir-10-P3
Spu-Mir-10-P3
Tca-Mir-10-P3
Xbo-Mir-10-P3
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Efe_combined) |
Efet.01.164893: 967-1031 [+]
|
Precursor (pre-Mir +30nt flank) |
CUUCCGCCGAUAUGACUUGUACCUGCUCUUUCCCUGAGACCUUAACCUGUGUCACGUGGUUCCGUCAGUUCACACCGGUCUUUGUCUCGGGGUAAGAGAGGGCAACUCGUCCACUUCCGAUCAGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUUCCGCCGAUAUGACU----| A G U CUUA U CACGUGGUU
UGU CCU CUCUU CCCUGAGAC ACC GUGU \
ACG GGA GAGAA GGGGCUCUG UGG CACA C
UGACUAGCCUUCACCUGCUCA^ - - U UUUC C CUUGACUGC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-10-P3i_5p |
mirBase accession | None |
Sequence |
0- UCCCUGAGACCUUAACCUGUGU -22
Get sequence
|
Star sequence |
Efe-Mir-10-P3i_3p* |
mirBase accession | None |
Sequence |
43- ACCGGUCUUUGUCUCGGGGUAA -65
Get sequence
|